miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 26860 0.67 0.183606
Target:  5'- aGCAcUGCGCGGCuacuucguCGCCGgUGaCGGCUGc -3'
miRNA:   3'- gCGUaGCGCGCCG--------GCGGC-GC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 4656 0.67 0.179041
Target:  5'- gGCGaCGgGCaGGCCGgCGCGCgGGUCu -3'
miRNA:   3'- gCGUaGCgCG-CCGGCgGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 12575 0.67 0.188274
Target:  5'- cCGCc-CGCGC-GCCGCCGgGCGcaGUCGg -3'
miRNA:   3'- -GCGuaGCGCGcCGGCGGCgCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 22490 0.67 0.165946
Target:  5'- --uGUCGCcgGCGGCgGCCG-GCGGCgGu -3'
miRNA:   3'- gcgUAGCG--CGCCGgCGGCgCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 45396 0.67 0.193045
Target:  5'- uGCAcgCGCGCuGCgcaugcaccUGCCGaGCGGCCGc -3'
miRNA:   3'- gCGUa-GCGCGcCG---------GCGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46537 0.67 0.193045
Target:  5'- gGUAUCGa-CGGCaCGCUGU-CGGCCGg -3'
miRNA:   3'- gCGUAGCgcGCCG-GCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 839 0.67 0.188274
Target:  5'- gCGCAcgUCacuaccgaGCGCGGacagcguacCCGUCGUGCcGGCCGg -3'
miRNA:   3'- -GCGU--AG--------CGCGCC---------GGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 11943 0.67 0.185461
Target:  5'- uCGCAccggUCGCGCaGGCCGUCGCcaaccucacuauacgGCaGGCgCGc -3'
miRNA:   3'- -GCGU----AGCGCG-CCGGCGGCG---------------CG-CCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 27260 0.67 0.183606
Target:  5'- aCGC-UCGCGUcgaauuGGcCCGaCUGCGCgaGGCCGa -3'
miRNA:   3'- -GCGuAGCGCG------CC-GGC-GGCGCG--CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26241 0.68 0.146024
Target:  5'- aGCGUCuuGcCGGCCGUCGCgaacGCGGCg- -3'
miRNA:   3'- gCGUAGcgC-GCCGGCGGCG----CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 7334 0.68 0.144528
Target:  5'- aGCAUCGCGUucaggagcgacuuGCCGCCGCcggugacgaucGCGGCg- -3'
miRNA:   3'- gCGUAGCGCGc------------CGGCGGCG-----------CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 22095 0.68 0.161776
Target:  5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3'
miRNA:   3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 3333 0.68 0.138684
Target:  5'- -aCGUCuGCGC-GCCGCCggcgccgcGCGCGGUCGa -3'
miRNA:   3'- gcGUAG-CGCGcCGGCGG--------CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19026 0.68 0.138684
Target:  5'- uCGCGUaGCGaCGGCCGauGCGC-GCCGc -3'
miRNA:   3'- -GCGUAgCGC-GCCGGCggCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 16766 0.68 0.138684
Target:  5'- --aGUCGCGCcugacGGCCGCCG-GCGuaucGCCGg -3'
miRNA:   3'- gcgUAGCGCG-----CCGGCGGCgCGC----CGGC- -5'
24284 3' -66.7 NC_005263.2 + 25876 0.68 0.149826
Target:  5'- gGCGUCGCaaccgGGCCgacGCCgGCGaCGGCCGc -3'
miRNA:   3'- gCGUAGCGcg---CCGG---CGG-CGC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 42875 0.68 0.1577
Target:  5'- gCGCcugAUCGCGUcaauGGCgUGCCGCGCGcucGCCu -3'
miRNA:   3'- -GCG---UAGCGCG----CCG-GCGGCGCGC---CGGc -5'
24284 3' -66.7 NC_005263.2 + 40887 0.68 0.141214
Target:  5'- cCGCAUgGCGCcGUCGCCugaucgcuggaaagGCGCaGCCGc -3'
miRNA:   3'- -GCGUAgCGCGcCGGCGG--------------CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 32919 0.68 0.161776
Target:  5'- cCGaCGUCGCGCGGCgGCuCGCGuCGaUCa -3'
miRNA:   3'- -GC-GUAGCGCGCCGgCG-GCGC-GCcGGc -5'
24284 3' -66.7 NC_005263.2 + 27444 0.68 0.146024
Target:  5'- aCGCuuUCGa-CGGCCGCgacgagcgGCGCGGCCa -3'
miRNA:   3'- -GCGu-AGCgcGCCGGCGg-------CGCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.