miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 29188 0.68 0.138684
Target:  5'- uCGUGcCGCGCGGUcaCGCuCGaCGCaGGCCGg -3'
miRNA:   3'- -GCGUaGCGCGCCG--GCG-GC-GCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3333 0.68 0.138684
Target:  5'- -aCGUCuGCGC-GCCGCCggcgccgcGCGCGGUCGa -3'
miRNA:   3'- gcGUAG-CGCGcCGGCGG--------CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19026 0.68 0.138684
Target:  5'- uCGCGUaGCGaCGGCCGauGCGC-GCCGc -3'
miRNA:   3'- -GCGUAgCGC-GCCGGCggCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39245 0.68 0.149826
Target:  5'- aCGCAUaGCGgGGCucgCGCCcCGCGcGCCGc -3'
miRNA:   3'- -GCGUAgCGCgCCG---GCGGcGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 16766 0.68 0.138684
Target:  5'- --aGUCGCGCcugacGGCCGCCG-GCGuaucGCCGg -3'
miRNA:   3'- gcgUAGCGCG-----CCGGCGGCgCGC----CGGC- -5'
24284 3' -66.7 NC_005263.2 + 7334 0.68 0.144528
Target:  5'- aGCAUCGCGUucaggagcgacuuGCCGCCGCcggugacgaucGCGGCg- -3'
miRNA:   3'- gCGUAGCGCGc------------CGGCGGCG-----------CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 28678 0.68 0.144901
Target:  5'- uCGUAUCGaGCGGCaCGCCgaacaccucaacgcGCGCGuuGCCGu -3'
miRNA:   3'- -GCGUAGCgCGCCG-GCGG--------------CGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 39268 0.68 0.142311
Target:  5'- aGCugCGCGCGaugcuugaucGCaCGCCGaGCGGCCGg -3'
miRNA:   3'- gCGuaGCGCGC----------CG-GCGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27444 0.68 0.146024
Target:  5'- aCGCuuUCGa-CGGCCGCgacgagcgGCGCGGCCa -3'
miRNA:   3'- -GCGu-AGCgcGCCGGCGg-------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 43500 0.68 0.149826
Target:  5'- gGCAcCuCGaaGCUGCCgGCGCGGCCGu -3'
miRNA:   3'- gCGUaGcGCgcCGGCGG-CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 10165 0.68 0.138684
Target:  5'- gGCcgGUUGCGCaccGGCUGCCG-GCGGCgCGc -3'
miRNA:   3'- gCG--UAGCGCG---CCGGCGGCgCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 19874 0.68 0.138684
Target:  5'- gGCga-GCGCGGCga--GCGCGGCCGa -3'
miRNA:   3'- gCGuagCGCGCCGgcggCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 30515 0.68 0.161776
Target:  5'- gCGCGUCGUGaccCCGCUGCGCGaGCa- -3'
miRNA:   3'- -GCGUAGCGCgccGGCGGCGCGC-CGgc -5'
24284 3' -66.7 NC_005263.2 + 22095 0.68 0.161776
Target:  5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3'
miRNA:   3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 36087 0.68 0.1577
Target:  5'- gCGCAagcUUGaGCGcGCCGUCGCGUugauGGCCGc -3'
miRNA:   3'- -GCGU---AGCgCGC-CGGCGGCGCG----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 30290 0.68 0.153717
Target:  5'- aCGUGUC-CGCGacagCGCCggGCGCGGCCGg -3'
miRNA:   3'- -GCGUAGcGCGCcg--GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 33640 0.68 0.153717
Target:  5'- uGC-UCGaagGCGuGCCGCCGCuCGGCuCGa -3'
miRNA:   3'- gCGuAGCg--CGC-CGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 10707 0.69 0.135142
Target:  5'- gCGCGaCGCGauGCaCGUCGCGCaGCCa -3'
miRNA:   3'- -GCGUaGCGCgcCG-GCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 16405 0.69 0.131684
Target:  5'- gGCAUCGCggguGCGGUacucggcgucggCGCUgGCGCGGCgGg -3'
miRNA:   3'- gCGUAGCG----CGCCG------------GCGG-CGCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 25590 0.69 0.117725
Target:  5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3'
miRNA:   3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.