miRNA display CGI


Results 101 - 120 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 27379 0.69 0.118652
Target:  5'- gCGCggCG-GCGGCCGgCGCGCuGaCCGg -3'
miRNA:   3'- -GCGuaGCgCGCCGGCgGCGCGcC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 10181 0.69 0.125011
Target:  5'- gCGCGaaUCGCGagcaGGCCGaaGCGCucGCCGg -3'
miRNA:   3'- -GCGU--AGCGCg---CCGGCggCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 6088 0.69 0.121793
Target:  5'- aGCcuUgGCGCGGCCgGCCGCaCuGCCGg -3'
miRNA:   3'- gCGu-AgCGCGCCGG-CGGCGcGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18801 0.69 0.119899
Target:  5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3'
miRNA:   3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 8739 0.69 0.118652
Target:  5'- uGCGUCGUagaaGCGcGCCGCCGCcgagcgaauCGGCUGc -3'
miRNA:   3'- gCGUAGCG----CGC-CGGCGGCGc--------GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 16405 0.69 0.131684
Target:  5'- gGCAUCGCggguGCGGUacucggcgucggCGCUgGCGCGGCgGg -3'
miRNA:   3'- gCGUAGCG----CGCCG------------GCGG-CGCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 20956 0.69 0.131684
Target:  5'- gGCcgCGCGCugucGGacauCGCCGaCGCGGCUGc -3'
miRNA:   3'- gCGuaGCGCG----CCg---GCGGC-GCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 33 0.69 0.131684
Target:  5'- uGCGUCacugGCGCGGCagGUCGgGCGcGCCu -3'
miRNA:   3'- gCGUAG----CGCGCCGg-CGGCgCGC-CGGc -5'
24284 3' -66.7 NC_005263.2 + 8383 0.69 0.135142
Target:  5'- uCGCcagGUCGaCGCGGC--CCGCGCcGGCCa -3'
miRNA:   3'- -GCG---UAGC-GCGCCGgcGGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 20662 0.69 0.118033
Target:  5'- cCGC-UCGuCGCGGCCGUCGaaagcguguucgGCGGCgCGa -3'
miRNA:   3'- -GCGuAGC-GCGCCGGCGGCg-----------CGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 38215 0.69 0.118652
Target:  5'- cCGC-UCGCGaUGGCCGCCGagaagcucUGCgGGCUGa -3'
miRNA:   3'- -GCGuAGCGC-GCCGGCGGC--------GCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19149 0.69 0.125011
Target:  5'- gCGCGUCGuCGUGaccgugcauCCGCCgGCGCGGCuCGu -3'
miRNA:   3'- -GCGUAGC-GCGCc--------GGCGG-CGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 47196 0.69 0.128307
Target:  5'- uGCGUCGacgaguaacccgccgGCGGCgacCGCCGCGCugaacgaagcgccGGCCGg -3'
miRNA:   3'- gCGUAGCg--------------CGCCG---GCGGCGCG-------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 10707 0.69 0.135142
Target:  5'- gCGCGaCGCGauGCaCGUCGCGCaGCCa -3'
miRNA:   3'- -GCGUaGCGCgcCG-GCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 25590 0.69 0.117725
Target:  5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3'
miRNA:   3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46058 0.69 0.131684
Target:  5'- cCGCGaacuacCGCGCGGgCGUCGacgugaucgaUGCGGCCGu -3'
miRNA:   3'- -GCGUa-----GCGCGCCgGCGGC----------GCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19750 0.69 0.135142
Target:  5'- gCGCuggCGCGCuGGCgGCgCuCGUGGCCGu -3'
miRNA:   3'- -GCGua-GCGCG-CCGgCG-GcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27791 0.69 0.131342
Target:  5'- uGCuUCGCGCGGUacauCGCCGUcgugaucGCGGCg- -3'
miRNA:   3'- gCGuAGCGCGCCG----GCGGCG-------CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 17393 0.7 0.10683
Target:  5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3'
miRNA:   3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 28230 0.7 0.104052
Target:  5'- uGCAUCGgcCGCGcUCGCCGCGCucGCCGu -3'
miRNA:   3'- gCGUAGC--GCGCcGGCGGCGCGc-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.