miRNA display CGI


Results 121 - 140 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 17393 0.7 0.10683
Target:  5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3'
miRNA:   3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 37944 0.7 0.10683
Target:  5'- gGCAgccggUGCGCaaccGGCCgauGCCGCGCcGGCUGg -3'
miRNA:   3'- gCGUa----GCGCG----CCGG---CGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 31248 0.7 0.112596
Target:  5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3'
miRNA:   3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39218 0.7 0.116804
Target:  5'- aGUAUUGCGCGcGCUgcaccggcagcacggGCCGCGUaucccgucGGCCGa -3'
miRNA:   3'- gCGUAGCGCGC-CGG---------------CGGCGCG--------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 31612 0.7 0.101342
Target:  5'- uGCcgGUCGCGaCGGCCGCgCGgCGCaGcGCCGu -3'
miRNA:   3'- gCG--UAGCGC-GCCGGCG-GC-GCG-C-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 2877 0.7 0.104878
Target:  5'- aCGaCGUCGCaGCggcgaggcugauguuGGCCgagacguGCUGCGCGGCCGu -3'
miRNA:   3'- -GC-GUAGCG-CG---------------CCGG-------CGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 699 0.7 0.10683
Target:  5'- gCGCgAUCGUGCcGCCGCC-CGCGagcGCCGu -3'
miRNA:   3'- -GCG-UAGCGCGcCGGCGGcGCGC---CGGC- -5'
24284 3' -66.7 NC_005263.2 + 28230 0.7 0.104052
Target:  5'- uGCAUCGgcCGCGcUCGCCGCGCucGCCGu -3'
miRNA:   3'- gCGUAGC--GCGCcGGCGGCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 14406 0.7 0.104052
Target:  5'- gGUGUCugGCGCGuauuGCCGCCGCGCuGcGCCa -3'
miRNA:   3'- gCGUAG--CGCGC----CGGCGGCGCG-C-CGGc -5'
24284 3' -66.7 NC_005263.2 + 35541 0.7 0.101342
Target:  5'- gGCggCGCGCgGGCgggcgcuacggCGCCGC-CGGCCGc -3'
miRNA:   3'- gCGuaGCGCG-CCG-----------GCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29624 0.7 0.115285
Target:  5'- aCGguUCGCccuGCaGCCaaaggguguaccaGCCGCGCGGCUGc -3'
miRNA:   3'- -GCguAGCG---CGcCGG-------------CGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 35749 0.7 0.112596
Target:  5'- aGCGUagGCGCGGgCGCgGUuacuGCGGCUGg -3'
miRNA:   3'- gCGUAg-CGCGCCgGCGgCG----CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 800 0.7 0.109678
Target:  5'- aGCGU-GC-CGGCCGCCgGCGCaGGaCCGa -3'
miRNA:   3'- gCGUAgCGcGCCGGCGG-CGCG-CC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 30713 0.7 0.115587
Target:  5'- cCGCcaggCGCGCGGCCGC-GC-CGGCa- -3'
miRNA:   3'- -GCGua--GCGCGCCGGCGgCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 42016 0.7 0.10683
Target:  5'- gGCA--GUGCGGCCgGCCGCGCcaaGGCUu -3'
miRNA:   3'- gCGUagCGCGCCGG-CGGCGCG---CCGGc -5'
24284 3' -66.7 NC_005263.2 + 38418 0.7 0.10683
Target:  5'- gCGCGUCGgGUGcGCCGgCGUGacgcCGGCCa -3'
miRNA:   3'- -GCGUAGCgCGC-CGGCgGCGC----GCCGGc -5'
24284 3' -66.7 NC_005263.2 + 40938 0.7 0.098699
Target:  5'- gGUAUCGCaGCGGCgaugGCCGCGCaauagGGUCGc -3'
miRNA:   3'- gCGUAGCG-CGCCGg---CGGCGCG-----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 28978 0.71 0.096121
Target:  5'- gCGCAagCGCcCGGCgaugCGCUcgGCGCGGCCGa -3'
miRNA:   3'- -GCGUa-GCGcGCCG----GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 35629 0.71 0.096121
Target:  5'- cCGCAaugCGCGCcGCCGguaucguguuCCGCGCGGgCGa -3'
miRNA:   3'- -GCGUa--GCGCGcCGGC----------GGCGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 46151 0.71 0.08416
Target:  5'- aGCAgaUCGaCGCGGuuGCCgGCGUcGCCGg -3'
miRNA:   3'- gCGU--AGC-GCGCCggCGG-CGCGcCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.