miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 28933 0.72 0.073626
Target:  5'- ----aCGCGCGGCCacgaGCCGCGCcGGCgGa -3'
miRNA:   3'- gcguaGCGCGCCGG----CGGCGCG-CCGgC- -5'
24284 3' -66.7 NC_005263.2 + 29020 0.72 0.073626
Target:  5'- uGCGUUGCGCaccgcgacGCCGUacugaCGCGCGGCCu -3'
miRNA:   3'- gCGUAGCGCGc-------CGGCG-----GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 24530 0.72 0.073626
Target:  5'- aCGUAUCGgGCaacGGCgGCgGCGCGGgCGg -3'
miRNA:   3'- -GCGUAGCgCG---CCGgCGgCGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 8848 0.72 0.071676
Target:  5'- aGCAUCGCGCGcaGCUcgGCCGacgggauaCGCGGCCc -3'
miRNA:   3'- gCGUAGCGCGC--CGG--CGGC--------GCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 32740 0.72 0.069776
Target:  5'- aCGUA-CGCGCuGCCGCuUGCGCGGCg- -3'
miRNA:   3'- -GCGUaGCGCGcCGGCG-GCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 18444 0.72 0.075626
Target:  5'- cCGCucgaggUGCGCGugaaGCaGCCGCGCGGCUGg -3'
miRNA:   3'- -GCGua----GCGCGC----CGgCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 15844 0.71 0.092128
Target:  5'- gCGCuUCGCGUGGCuCGCCGCGauucagcagaugcaGGCg- -3'
miRNA:   3'- -GCGuAGCGCGCCG-GCGGCGCg-------------CCGgc -5'
24284 3' -66.7 NC_005263.2 + 22212 0.71 0.093606
Target:  5'- aCGUA-CGuCGCGGCCGUCGC-CGGCg- -3'
miRNA:   3'- -GCGUaGC-GCGCCGGCGGCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 15176 0.71 0.091154
Target:  5'- cCGCAgugaUCGaCGCGaGCgCGCCGCGCGacGUCGg -3'
miRNA:   3'- -GCGU----AGC-GCGC-CG-GCGGCGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 18867 0.71 0.088764
Target:  5'- aCGCGugccUCG-GCGcGCCGCUGCGC-GCCGa -3'
miRNA:   3'- -GCGU----AGCgCGC-CGGCGGCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 28978 0.71 0.096121
Target:  5'- gCGCAagCGCcCGGCgaugCGCUcgGCGCGGCCGa -3'
miRNA:   3'- -GCGUa-GCGcGCCG----GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27044 0.71 0.086432
Target:  5'- aGCAggaUGCGCGGCCGCC-CGuCGGgCa -3'
miRNA:   3'- gCGUa--GCGCGCCGGCGGcGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 46151 0.71 0.08416
Target:  5'- aGCAgaUCGaCGCGGuuGCCgGCGUcGCCGg -3'
miRNA:   3'- gCGU--AGC-GCGCCggCGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 10891 0.71 0.08416
Target:  5'- gCGCGUCGUgaGCGGCguauCGCCGCGCugggggauGCCGc -3'
miRNA:   3'- -GCGUAGCG--CGCCG----GCGGCGCGc-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 24787 0.71 0.093606
Target:  5'- gGCGUCG-GCGGCuCGCCGgGCG-UCGg -3'
miRNA:   3'- gCGUAGCgCGCCG-GCGGCgCGCcGGC- -5'
24284 3' -66.7 NC_005263.2 + 35629 0.71 0.096121
Target:  5'- cCGCAaugCGCGCcGCCGguaucguguuCCGCGCGGgCGa -3'
miRNA:   3'- -GCGUa--GCGCGcCGGC----------GGCGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 28068 0.71 0.086432
Target:  5'- uCGCAcucaaCGCGCGGCaCGaucccguguguUgGCGCGGCCGa -3'
miRNA:   3'- -GCGUa----GCGCGCCG-GC-----------GgCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29517 0.71 0.088764
Target:  5'- gGCGUC-CGuCGGCgCGCCaGCaGUGGCCGg -3'
miRNA:   3'- gCGUAGcGC-GCCG-GCGG-CG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 41156 0.71 0.091154
Target:  5'- gGCGuUCGCGCGG-CGUgG-GCGGCCGu -3'
miRNA:   3'- gCGU-AGCGCGCCgGCGgCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 891 0.71 0.093606
Target:  5'- uCGUucagCGCgGCGGUCGCCGC-CGGCgGg -3'
miRNA:   3'- -GCGua--GCG-CGCCGGCGGCGcGCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.