miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 46151 0.71 0.08416
Target:  5'- aGCAgaUCGaCGCGGuuGCCgGCGUcGCCGg -3'
miRNA:   3'- gCGU--AGC-GCGCCggCGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37202 0.71 0.095866
Target:  5'- gGCAUCccccaGCGCGGCgauaCGCCGCucacgacGCGcGCCGg -3'
miRNA:   3'- gCGUAG-----CGCGCCG----GCGGCG-------CGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 3305 0.71 0.093606
Target:  5'- uGUG-CGCGCGGCgG-CGCGCGGuuGa -3'
miRNA:   3'- gCGUaGCGCGCCGgCgGCGCGCCggC- -5'
24284 3' -66.7 NC_005263.2 + 46678 0.71 0.088764
Target:  5'- aGCcUCGCGCGcaGCCaagGCgGCGCGcGCCGa -3'
miRNA:   3'- gCGuAGCGCGC--CGG---CGgCGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 5579 0.71 0.088528
Target:  5'- aGCucgAUUGUGCGGCCGUCGgGCauccgcacggcgaGGCCGu -3'
miRNA:   3'- gCG---UAGCGCGCCGGCGGCgCG-------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29270 0.71 0.086432
Target:  5'- aCGCgGUCGaaCGCGGCaaugaGCUGCacgGCGGCCGg -3'
miRNA:   3'- -GCG-UAGC--GCGCCGg----CGGCG---CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 6554 0.71 0.08416
Target:  5'- uCGCAUCGCcgccaCGGCgCGCCGCGCGuuUGc -3'
miRNA:   3'- -GCGUAGCGc----GCCG-GCGGCGCGCcgGC- -5'
24284 3' -66.7 NC_005263.2 + 10750 0.71 0.083489
Target:  5'- gCGCAcgCGCauGCGGCCGUcggcaucaaagcugCGCGCGGUCu -3'
miRNA:   3'- -GCGUa-GCG--CGCCGGCG--------------GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 14055 0.71 0.081944
Target:  5'- cCGCGUCGaGCGcauugaGCgCGCCGCGCcGGCCc -3'
miRNA:   3'- -GCGUAGCgCGC------CG-GCGGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 31553 0.71 0.081725
Target:  5'- gGCGUCGCugcccagGCGGCgCGCCGUGCucgacaacGCCGa -3'
miRNA:   3'- gCGUAGCG-------CGCCG-GCGGCGCGc-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 21390 0.71 0.096121
Target:  5'- gCGCuUCGCGCuGCCGCagGC-CGGCCu -3'
miRNA:   3'- -GCGuAGCGCGcCGGCGg-CGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 17393 0.7 0.10683
Target:  5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3'
miRNA:   3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 31248 0.7 0.112596
Target:  5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3'
miRNA:   3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37944 0.7 0.10683
Target:  5'- gGCAgccggUGCGCaaccGGCCgauGCCGCGCcGGCUGg -3'
miRNA:   3'- gCGUa----GCGCG----CCGG---CGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27685 0.7 0.10683
Target:  5'- cCGCcuucUUGUGCGcGCCGgCGCcgGCGGCCGc -3'
miRNA:   3'- -GCGu---AGCGCGC-CGGCgGCG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 40938 0.7 0.098699
Target:  5'- gGUAUCGCaGCGGCgaugGCCGCGCaauagGGUCGc -3'
miRNA:   3'- gCGUAGCG-CGCCGg---CGGCGCG-----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 35541 0.7 0.101342
Target:  5'- gGCggCGCGCgGGCgggcgcuacggCGCCGC-CGGCCGc -3'
miRNA:   3'- gCGuaGCGCG-CCG-----------GCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14406 0.7 0.104052
Target:  5'- gGUGUCugGCGCGuauuGCCGCCGCGCuGcGCCa -3'
miRNA:   3'- gCGUAG--CGCGC----CGGCGGCGCG-C-CGGc -5'
24284 3' -66.7 NC_005263.2 + 28230 0.7 0.104052
Target:  5'- uGCAUCGgcCGCGcUCGCCGCGCucGCCGu -3'
miRNA:   3'- gCGUAGC--GCGCcGGCGGCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 37821 0.7 0.10683
Target:  5'- gCGCAUCcgGCGCucauGUCGCCGaCGCGGCg- -3'
miRNA:   3'- -GCGUAG--CGCGc---CGGCGGC-GCGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.