Results 81 - 100 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 35749 | 0.7 | 0.112596 |
Target: 5'- aGCGUagGCGCGGgCGCgGUuacuGCGGCUGg -3' miRNA: 3'- gCGUAg-CGCGCCgGCGgCG----CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 37821 | 0.7 | 0.10683 |
Target: 5'- gCGCAUCcgGCGCucauGUCGCCGaCGCGGCg- -3' miRNA: 3'- -GCGUAG--CGCGc---CGGCGGC-GCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27685 | 0.7 | 0.10683 |
Target: 5'- cCGCcuucUUGUGCGcGCCGgCGCcgGCGGCCGc -3' miRNA: 3'- -GCGu---AGCGCGC-CGGCgGCG--CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 14406 | 0.7 | 0.104052 |
Target: 5'- gGUGUCugGCGCGuauuGCCGCCGCGCuGcGCCa -3' miRNA: 3'- gCGUAG--CGCGC----CGGCGGCGCG-C-CGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 40938 | 0.7 | 0.098699 |
Target: 5'- gGUAUCGCaGCGGCgaugGCCGCGCaauagGGUCGc -3' miRNA: 3'- gCGUAGCG-CGCCGg---CGGCGCG-----CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 42016 | 0.7 | 0.10683 |
Target: 5'- gGCA--GUGCGGCCgGCCGCGCcaaGGCUu -3' miRNA: 3'- gCGUagCGCGCCGG-CGGCGCG---CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 37944 | 0.7 | 0.10683 |
Target: 5'- gGCAgccggUGCGCaaccGGCCgauGCCGCGCcGGCUGg -3' miRNA: 3'- gCGUa----GCGCG----CCGG---CGGCGCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 35541 | 0.7 | 0.101342 |
Target: 5'- gGCggCGCGCgGGCgggcgcuacggCGCCGC-CGGCCGc -3' miRNA: 3'- gCGuaGCGCG-CCG-----------GCGGCGcGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31248 | 0.7 | 0.112596 |
Target: 5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3' miRNA: 3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 17393 | 0.7 | 0.10683 |
Target: 5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3' miRNA: 3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 10181 | 0.69 | 0.125011 |
Target: 5'- gCGCGaaUCGCGagcaGGCCGaaGCGCucGCCGg -3' miRNA: 3'- -GCGU--AGCGCg---CCGGCggCGCGc-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16405 | 0.69 | 0.131684 |
Target: 5'- gGCAUCGCggguGCGGUacucggcgucggCGCUgGCGCGGCgGg -3' miRNA: 3'- gCGUAGCG----CGCCG------------GCGG-CGCGCCGgC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 39087 | 0.69 | 0.129648 |
Target: 5'- uCGcCGUCGCGCGGCaCGaaaauccugugggaCGUGgUGGCCGg -3' miRNA: 3'- -GC-GUAGCGCGCCG-GCg-------------GCGC-GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 8802 | 0.69 | 0.125011 |
Target: 5'- uGCgAUCGCGCGcGCaugCGCCuGC-CGGCCGc -3' miRNA: 3'- gCG-UAGCGCGC-CG---GCGG-CGcGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 3278 | 0.69 | 0.124037 |
Target: 5'- aGUAUCGCcucGCaGuCCGCCguuuucuugccuggGCGCGGCCGc -3' miRNA: 3'- gCGUAGCG---CGcC-GGCGG--------------CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 6088 | 0.69 | 0.121793 |
Target: 5'- aGCcuUgGCGCGGCCgGCCGCaCuGCCGg -3' miRNA: 3'- gCGu-AgCGCGCCGG-CGGCGcGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18801 | 0.69 | 0.119899 |
Target: 5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3' miRNA: 3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 8739 | 0.69 | 0.118652 |
Target: 5'- uGCGUCGUagaaGCGcGCCGCCGCcgagcgaauCGGCUGc -3' miRNA: 3'- gCGUAGCG----CGC-CGGCGGCGc--------GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27379 | 0.69 | 0.118652 |
Target: 5'- gCGCggCG-GCGGCCGgCGCGCuGaCCGg -3' miRNA: 3'- -GCGuaGCgCGCCGGCgGCGCGcC-GGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 25590 | 0.69 | 0.117725 |
Target: 5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3' miRNA: 3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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