miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 18444 0.72 0.075626
Target:  5'- cCGCucgaggUGCGCGugaaGCaGCCGCGCGGCUGg -3'
miRNA:   3'- -GCGua----GCGCGC----CGgCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 34063 0.72 0.077678
Target:  5'- gCGC-UCGaCGCGG-CGCC-CGUGGCCGa -3'
miRNA:   3'- -GCGuAGC-GCGCCgGCGGcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 5831 0.72 0.077678
Target:  5'- aCGCAuaccauuugUUGU-CGGCCGUCGUGCGGUCGa -3'
miRNA:   3'- -GCGU---------AGCGcGCCGGCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2689 0.72 0.079784
Target:  5'- aGCugAUCGCGCGGCCGCUcggcaggugcauGCGCaGCgCGc -3'
miRNA:   3'- gCG--UAGCGCGCCGGCGG------------CGCGcCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 2610 0.72 0.079784
Target:  5'- uCGCccaAUUGCGCgacaGGCCGaCCGCGCGGUUc -3'
miRNA:   3'- -GCG---UAGCGCG----CCGGC-GGCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 2749 0.72 0.079784
Target:  5'- aGCcgagauCGCGGCCGCCGUGCcGGUCGu -3'
miRNA:   3'- gCGuagc--GCGCCGGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 31553 0.71 0.081725
Target:  5'- gGCGUCGCugcccagGCGGCgCGCCGUGCucgacaacGCCGa -3'
miRNA:   3'- gCGUAGCG-------CGCCG-GCGGCGCGc-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 14055 0.71 0.081944
Target:  5'- cCGCGUCGaGCGcauugaGCgCGCCGCGCcGGCCc -3'
miRNA:   3'- -GCGUAGCgCGC------CG-GCGGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 10750 0.71 0.083489
Target:  5'- gCGCAcgCGCauGCGGCCGUcggcaucaaagcugCGCGCGGUCu -3'
miRNA:   3'- -GCGUa-GCG--CGCCGGCG--------------GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 6554 0.71 0.08416
Target:  5'- uCGCAUCGCcgccaCGGCgCGCCGCGCGuuUGc -3'
miRNA:   3'- -GCGUAGCGc----GCCG-GCGGCGCGCcgGC- -5'
24284 3' -66.7 NC_005263.2 + 10891 0.71 0.08416
Target:  5'- gCGCGUCGUgaGCGGCguauCGCCGCGCugggggauGCCGc -3'
miRNA:   3'- -GCGUAGCG--CGCCG----GCGGCGCGc-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 46151 0.71 0.08416
Target:  5'- aGCAgaUCGaCGCGGuuGCCgGCGUcGCCGg -3'
miRNA:   3'- gCGU--AGC-GCGCCggCGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29270 0.71 0.086432
Target:  5'- aCGCgGUCGaaCGCGGCaaugaGCUGCacgGCGGCCGg -3'
miRNA:   3'- -GCG-UAGC--GCGCCGg----CGGCG---CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27044 0.71 0.086432
Target:  5'- aGCAggaUGCGCGGCCGCC-CGuCGGgCa -3'
miRNA:   3'- gCGUa--GCGCGCCGGCGGcGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 28068 0.71 0.086432
Target:  5'- uCGCAcucaaCGCGCGGCaCGaucccguguguUgGCGCGGCCGa -3'
miRNA:   3'- -GCGUa----GCGCGCCG-GC-----------GgCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 5579 0.71 0.088528
Target:  5'- aGCucgAUUGUGCGGCCGUCGgGCauccgcacggcgaGGCCGu -3'
miRNA:   3'- gCG---UAGCGCGCCGGCGGCgCG-------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46678 0.71 0.088764
Target:  5'- aGCcUCGCGCGcaGCCaagGCgGCGCGcGCCGa -3'
miRNA:   3'- gCGuAGCGCGC--CGG---CGgCGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 29517 0.71 0.088764
Target:  5'- gGCGUC-CGuCGGCgCGCCaGCaGUGGCCGg -3'
miRNA:   3'- gCGUAGcGC-GCCG-GCGG-CG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18867 0.71 0.088764
Target:  5'- aCGCGugccUCG-GCGcGCCGCUGCGC-GCCGa -3'
miRNA:   3'- -GCGU----AGCgCGC-CGGCGGCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 15176 0.71 0.091154
Target:  5'- cCGCAgugaUCGaCGCGaGCgCGCCGCGCGacGUCGg -3'
miRNA:   3'- -GCGU----AGC-GCGC-CG-GCGGCGCGC--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.