miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 17393 0.7 0.10683
Target:  5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3'
miRNA:   3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 27685 0.7 0.10683
Target:  5'- cCGCcuucUUGUGCGcGCCGgCGCcgGCGGCCGc -3'
miRNA:   3'- -GCGu---AGCGCGC-CGGCgGCG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37944 0.7 0.10683
Target:  5'- gGCAgccggUGCGCaaccGGCCgauGCCGCGCcGGCUGg -3'
miRNA:   3'- gCGUa----GCGCG----CCGG---CGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38418 0.7 0.10683
Target:  5'- gCGCGUCGgGUGcGCCGgCGUGacgcCGGCCa -3'
miRNA:   3'- -GCGUAGCgCGC-CGGCgGCGC----GCCGGc -5'
24284 3' -66.7 NC_005263.2 + 800 0.7 0.109678
Target:  5'- aGCGU-GC-CGGCCGCCgGCGCaGGaCCGa -3'
miRNA:   3'- gCGUAgCGcGCCGGCGG-CGCG-CC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 31248 0.7 0.112596
Target:  5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3'
miRNA:   3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 35749 0.7 0.112596
Target:  5'- aGCGUagGCGCGGgCGCgGUuacuGCGGCUGg -3'
miRNA:   3'- gCGUAg-CGCGCCgGCGgCG----CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29624 0.7 0.115285
Target:  5'- aCGguUCGCccuGCaGCCaaaggguguaccaGCCGCGCGGCUGc -3'
miRNA:   3'- -GCguAGCG---CGcCGG-------------CGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 30713 0.7 0.115587
Target:  5'- cCGCcaggCGCGCGGCCGC-GC-CGGCa- -3'
miRNA:   3'- -GCGua--GCGCGCCGGCGgCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 39218 0.7 0.116804
Target:  5'- aGUAUUGCGCGcGCUgcaccggcagcacggGCCGCGUaucccgucGGCCGa -3'
miRNA:   3'- gCGUAGCGCGC-CGG---------------CGGCGCG--------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 25590 0.69 0.117725
Target:  5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3'
miRNA:   3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20662 0.69 0.118033
Target:  5'- cCGC-UCGuCGCGGCCGUCGaaagcguguucgGCGGCgCGa -3'
miRNA:   3'- -GCGuAGC-GCGCCGGCGGCg-----------CGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 38215 0.69 0.118652
Target:  5'- cCGC-UCGCGaUGGCCGCCGagaagcucUGCgGGCUGa -3'
miRNA:   3'- -GCGuAGCGC-GCCGGCGGC--------GCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27379 0.69 0.118652
Target:  5'- gCGCggCG-GCGGCCGgCGCGCuGaCCGg -3'
miRNA:   3'- -GCGuaGCgCGCCGGCgGCGCGcC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 8739 0.69 0.118652
Target:  5'- uGCGUCGUagaaGCGcGCCGCCGCcgagcgaauCGGCUGc -3'
miRNA:   3'- gCGUAGCG----CGC-CGGCGGCGc--------GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18801 0.69 0.119899
Target:  5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3'
miRNA:   3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 6088 0.69 0.121793
Target:  5'- aGCcuUgGCGCGGCCgGCCGCaCuGCCGg -3'
miRNA:   3'- gCGu-AgCGCGCCGG-CGGCGcGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3278 0.69 0.124037
Target:  5'- aGUAUCGCcucGCaGuCCGCCguuuucuugccuggGCGCGGCCGc -3'
miRNA:   3'- gCGUAGCG---CGcC-GGCGG--------------CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 10181 0.69 0.125011
Target:  5'- gCGCGaaUCGCGagcaGGCCGaaGCGCucGCCGg -3'
miRNA:   3'- -GCGU--AGCGCg---CCGGCggCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 8802 0.69 0.125011
Target:  5'- uGCgAUCGCGCGcGCaugCGCCuGC-CGGCCGc -3'
miRNA:   3'- gCG-UAGCGCGC-CG---GCGG-CGcGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.