Results 101 - 120 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 8802 | 0.69 | 0.125011 |
Target: 5'- uGCgAUCGCGCGcGCaugCGCCuGC-CGGCCGc -3' miRNA: 3'- gCG-UAGCGCGC-CG---GCGG-CGcGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 47196 | 0.69 | 0.128307 |
Target: 5'- uGCGUCGacgaguaacccgccgGCGGCgacCGCCGCGCugaacgaagcgccGGCCGg -3' miRNA: 3'- gCGUAGCg--------------CGCCG---GCGGCGCG-------------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 39087 | 0.69 | 0.129648 |
Target: 5'- uCGcCGUCGCGCGGCaCGaaaauccugugggaCGUGgUGGCCGg -3' miRNA: 3'- -GC-GUAGCGCGCCG-GCg-------------GCGC-GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27791 | 0.69 | 0.131342 |
Target: 5'- uGCuUCGCGCGGUacauCGCCGUcgugaucGCGGCg- -3' miRNA: 3'- gCGuAGCGCGCCG----GCGGCG-------CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16405 | 0.69 | 0.131684 |
Target: 5'- gGCAUCGCggguGCGGUacucggcgucggCGCUgGCGCGGCgGg -3' miRNA: 3'- gCGUAGCG----CGCCG------------GCGG-CGCGCCGgC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 46058 | 0.69 | 0.131684 |
Target: 5'- cCGCGaacuacCGCGCGGgCGUCGacgugaucgaUGCGGCCGu -3' miRNA: 3'- -GCGUa-----GCGCGCCgGCGGC----------GCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20956 | 0.69 | 0.131684 |
Target: 5'- gGCcgCGCGCugucGGacauCGCCGaCGCGGCUGc -3' miRNA: 3'- gCGuaGCGCG----CCg---GCGGC-GCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 33 | 0.69 | 0.131684 |
Target: 5'- uGCGUCacugGCGCGGCagGUCGgGCGcGCCu -3' miRNA: 3'- gCGUAG----CGCGCCGg-CGGCgCGC-CGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 10707 | 0.69 | 0.135142 |
Target: 5'- gCGCGaCGCGauGCaCGUCGCGCaGCCa -3' miRNA: 3'- -GCGUaGCGCgcCG-GCGGCGCGcCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 8383 | 0.69 | 0.135142 |
Target: 5'- uCGCcagGUCGaCGCGGC--CCGCGCcGGCCa -3' miRNA: 3'- -GCG---UAGC-GCGCCGgcGGCGCG-CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19750 | 0.69 | 0.135142 |
Target: 5'- gCGCuggCGCGCuGGCgGCgCuCGUGGCCGu -3' miRNA: 3'- -GCGua-GCGCG-CCGgCG-GcGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19874 | 0.68 | 0.138684 |
Target: 5'- gGCga-GCGCGGCga--GCGCGGCCGa -3' miRNA: 3'- gCGuagCGCGCCGgcggCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 3333 | 0.68 | 0.138684 |
Target: 5'- -aCGUCuGCGC-GCCGCCggcgccgcGCGCGGUCGa -3' miRNA: 3'- gcGUAG-CGCGcCGGCGG--------CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19026 | 0.68 | 0.138684 |
Target: 5'- uCGCGUaGCGaCGGCCGauGCGC-GCCGc -3' miRNA: 3'- -GCGUAgCGC-GCCGGCggCGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16766 | 0.68 | 0.138684 |
Target: 5'- --aGUCGCGCcugacGGCCGCCG-GCGuaucGCCGg -3' miRNA: 3'- gcgUAGCGCG-----CCGGCGGCgCGC----CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 10165 | 0.68 | 0.138684 |
Target: 5'- gGCcgGUUGCGCaccGGCUGCCG-GCGGCgCGc -3' miRNA: 3'- gCG--UAGCGCG---CCGGCGGCgCGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30275 | 0.68 | 0.138684 |
Target: 5'- aGCGcUGCGCaaucgGGCCG-CGCGCGGCa- -3' miRNA: 3'- gCGUaGCGCG-----CCGGCgGCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29188 | 0.68 | 0.138684 |
Target: 5'- uCGUGcCGCGCGGUcaCGCuCGaCGCaGGCCGg -3' miRNA: 3'- -GCGUaGCGCGCCG--GCG-GC-GCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 40887 | 0.68 | 0.141214 |
Target: 5'- cCGCAUgGCGCcGUCGCCugaucgcuggaaagGCGCaGCCGc -3' miRNA: 3'- -GCGUAgCGCGcCGGCGG--------------CGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 40402 | 0.68 | 0.142311 |
Target: 5'- uGCuaacgGUGCacaCGCCGCGCGGCCGa -3' miRNA: 3'- gCGuag--CGCGccgGCGGCGCGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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