Results 121 - 140 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 39268 | 0.68 | 0.142311 |
Target: 5'- aGCugCGCGCGaugcuugaucGCaCGCCGaGCGGCCGg -3' miRNA: 3'- gCGuaGCGCGC----------CG-GCGGCgCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 7334 | 0.68 | 0.144528 |
Target: 5'- aGCAUCGCGUucaggagcgacuuGCCGCCGCcggugacgaucGCGGCg- -3' miRNA: 3'- gCGUAGCGCGc------------CGGCGGCG-----------CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31512 | 0.68 | 0.144901 |
Target: 5'- uGCucgCGCGCGagcccggcgaacgcGUCGCCGC-CGGCCu -3' miRNA: 3'- gCGua-GCGCGC--------------CGGCGGCGcGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 28678 | 0.68 | 0.144901 |
Target: 5'- uCGUAUCGaGCGGCaCGCCgaacaccucaacgcGCGCGuuGCCGu -3' miRNA: 3'- -GCGUAGCgCGCCG-GCGG--------------CGCGC--CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 13735 | 0.68 | 0.146024 |
Target: 5'- uGC-UCGCgGCGuuaCCGCCG-GCGGCCa -3' miRNA: 3'- gCGuAGCG-CGCc--GGCGGCgCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26241 | 0.68 | 0.146024 |
Target: 5'- aGCGUCuuGcCGGCCGUCGCgaacGCGGCg- -3' miRNA: 3'- gCGUAGcgC-GCCGGCGGCG----CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27444 | 0.68 | 0.146024 |
Target: 5'- aCGCuuUCGa-CGGCCGCgacgagcgGCGCGGCCa -3' miRNA: 3'- -GCGu-AGCgcGCCGGCGg-------CGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 25876 | 0.68 | 0.149826 |
Target: 5'- gGCGUCGCaaccgGGCCgacGCCgGCGaCGGCCGc -3' miRNA: 3'- gCGUAGCGcg---CCGG---CGG-CGC-GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 39245 | 0.68 | 0.149826 |
Target: 5'- aCGCAUaGCGgGGCucgCGCCcCGCGcGCCGc -3' miRNA: 3'- -GCGUAgCGCgCCG---GCGGcGCGC-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 43500 | 0.68 | 0.149826 |
Target: 5'- gGCAcCuCGaaGCUGCCgGCGCGGCCGu -3' miRNA: 3'- gCGUaGcGCgcCGGCGG-CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30290 | 0.68 | 0.153717 |
Target: 5'- aCGUGUC-CGCGacagCGCCggGCGCGGCCGg -3' miRNA: 3'- -GCGUAGcGCGCcg--GCGG--CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 33640 | 0.68 | 0.153717 |
Target: 5'- uGC-UCGaagGCGuGCCGCCGCuCGGCuCGa -3' miRNA: 3'- gCGuAGCg--CGC-CGGCGGCGcGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18899 | 0.68 | 0.1577 |
Target: 5'- gGCAaauaCGCGcCGGCCugcgucgagcguGaCCGCGCGGCaCGa -3' miRNA: 3'- gCGUa---GCGC-GCCGG------------C-GGCGCGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 36087 | 0.68 | 0.1577 |
Target: 5'- gCGCAagcUUGaGCGcGCCGUCGCGUugauGGCCGc -3' miRNA: 3'- -GCGU---AGCgCGC-CGGCGGCGCG----CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 42875 | 0.68 | 0.1577 |
Target: 5'- gCGCcugAUCGCGUcaauGGCgUGCCGCGCGcucGCCu -3' miRNA: 3'- -GCG---UAGCGCG----CCG-GCGGCGCGC---CGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22095 | 0.68 | 0.161776 |
Target: 5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3' miRNA: 3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 32919 | 0.68 | 0.161776 |
Target: 5'- cCGaCGUCGCGCGGCgGCuCGCGuCGaUCa -3' miRNA: 3'- -GC-GUAGCGCGCCGgCG-GCGC-GCcGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 12516 | 0.68 | 0.161776 |
Target: 5'- gGCuUCGCGCGGguuggcguUCGCauucacguuCGCgGCGGCCGg -3' miRNA: 3'- gCGuAGCGCGCC--------GGCG---------GCG-CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30515 | 0.68 | 0.161776 |
Target: 5'- gCGCGUCGUGaccCCGCUGCGCGaGCa- -3' miRNA: 3'- -GCGUAGCGCgccGGCGGCGCGC-CGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 3462 | 0.67 | 0.165946 |
Target: 5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3' miRNA: 3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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