miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 39891 0.67 0.170213
Target:  5'- gGgGUCGC-CGGCUGUCGaaGCGGUCGu -3'
miRNA:   3'- gCgUAGCGcGCCGGCGGCg-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20133 0.67 0.170213
Target:  5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3'
miRNA:   3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 20391 0.67 0.168923
Target:  5'- uGCcUCGaccgagcaagccuaUGCGGCCGCCGgCGcCGGCgCGc -3'
miRNA:   3'- gCGuAGC--------------GCGCCGGCGGC-GC-GCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 31711 0.67 0.167641
Target:  5'- cCGCAcccgCGaUGCcggccagcuucaucaGGCCGCCGCcgagcgacGCGGCCGc -3'
miRNA:   3'- -GCGUa---GC-GCG---------------CCGGCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14442 0.67 0.165946
Target:  5'- gGCGUgCGCGCGcGCCucuuucgaGCCGaGCGGCgGc -3'
miRNA:   3'- gCGUA-GCGCGC-CGG--------CGGCgCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 43060 0.67 0.165946
Target:  5'- cCGaCGUCGgccaauaGuCGGCCGCCGgGCcGGCUGu -3'
miRNA:   3'- -GC-GUAGCg------C-GCCGGCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 23142 0.67 0.165946
Target:  5'- aGCAUCGUGuuGCCGaucugcgaaCCGCGCaccGCCGu -3'
miRNA:   3'- gCGUAGCGCgcCGGC---------GGCGCGc--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 3462 0.67 0.165946
Target:  5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3'
miRNA:   3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 22490 0.67 0.165946
Target:  5'- --uGUCGCcgGCGGCgGCCG-GCGGCgGu -3'
miRNA:   3'- gcgUAGCG--CGCCGgCGGCgCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 30515 0.68 0.161776
Target:  5'- gCGCGUCGUGaccCCGCUGCGCGaGCa- -3'
miRNA:   3'- -GCGUAGCGCgccGGCGGCGCGC-CGgc -5'
24284 3' -66.7 NC_005263.2 + 32919 0.68 0.161776
Target:  5'- cCGaCGUCGCGCGGCgGCuCGCGuCGaUCa -3'
miRNA:   3'- -GC-GUAGCGCGCCGgCG-GCGC-GCcGGc -5'
24284 3' -66.7 NC_005263.2 + 22095 0.68 0.161776
Target:  5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3'
miRNA:   3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 12516 0.68 0.161776
Target:  5'- gGCuUCGCGCGGguuggcguUCGCauucacguuCGCgGCGGCCGg -3'
miRNA:   3'- gCGuAGCGCGCC--------GGCG---------GCG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 42875 0.68 0.1577
Target:  5'- gCGCcugAUCGCGUcaauGGCgUGCCGCGCGcucGCCu -3'
miRNA:   3'- -GCG---UAGCGCG----CCG-GCGGCGCGC---CGGc -5'
24284 3' -66.7 NC_005263.2 + 18899 0.68 0.1577
Target:  5'- gGCAaauaCGCGcCGGCCugcgucgagcguGaCCGCGCGGCaCGa -3'
miRNA:   3'- gCGUa---GCGC-GCCGG------------C-GGCGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 36087 0.68 0.1577
Target:  5'- gCGCAagcUUGaGCGcGCCGUCGCGUugauGGCCGc -3'
miRNA:   3'- -GCGU---AGCgCGC-CGGCGGCGCG----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 30290 0.68 0.153717
Target:  5'- aCGUGUC-CGCGacagCGCCggGCGCGGCCGg -3'
miRNA:   3'- -GCGUAGcGCGCcg--GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 33640 0.68 0.153717
Target:  5'- uGC-UCGaagGCGuGCCGCCGCuCGGCuCGa -3'
miRNA:   3'- gCGuAGCg--CGC-CGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 43500 0.68 0.149826
Target:  5'- gGCAcCuCGaaGCUGCCgGCGCGGCCGu -3'
miRNA:   3'- gCGUaGcGCgcCGGCGG-CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39245 0.68 0.149826
Target:  5'- aCGCAUaGCGgGGCucgCGCCcCGCGcGCCGc -3'
miRNA:   3'- -GCGUAgCGCgCCG---GCGGcGCGC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.