Results 81 - 100 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 43500 | 0.68 | 0.149826 |
Target: 5'- gGCAcCuCGaaGCUGCCgGCGCGGCCGu -3' miRNA: 3'- gCGUaGcGCgcCGGCGG-CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27444 | 0.68 | 0.146024 |
Target: 5'- aCGCuuUCGa-CGGCCGCgacgagcgGCGCGGCCa -3' miRNA: 3'- -GCGu-AGCgcGCCGGCGg-------CGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 13735 | 0.68 | 0.146024 |
Target: 5'- uGC-UCGCgGCGuuaCCGCCG-GCGGCCa -3' miRNA: 3'- gCGuAGCG-CGCc--GGCGGCgCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26241 | 0.68 | 0.146024 |
Target: 5'- aGCGUCuuGcCGGCCGUCGCgaacGCGGCg- -3' miRNA: 3'- gCGUAGcgC-GCCGGCGGCG----CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 28678 | 0.68 | 0.144901 |
Target: 5'- uCGUAUCGaGCGGCaCGCCgaacaccucaacgcGCGCGuuGCCGu -3' miRNA: 3'- -GCGUAGCgCGCCG-GCGG--------------CGCGC--CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31512 | 0.68 | 0.144901 |
Target: 5'- uGCucgCGCGCGagcccggcgaacgcGUCGCCGC-CGGCCu -3' miRNA: 3'- gCGua-GCGCGC--------------CGGCGGCGcGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 7334 | 0.68 | 0.144528 |
Target: 5'- aGCAUCGCGUucaggagcgacuuGCCGCCGCcggugacgaucGCGGCg- -3' miRNA: 3'- gCGUAGCGCGc------------CGGCGGCG-----------CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 40402 | 0.68 | 0.142311 |
Target: 5'- uGCuaacgGUGCacaCGCCGCGCGGCCGa -3' miRNA: 3'- gCGuag--CGCGccgGCGGCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 39268 | 0.68 | 0.142311 |
Target: 5'- aGCugCGCGCGaugcuugaucGCaCGCCGaGCGGCCGg -3' miRNA: 3'- gCGuaGCGCGC----------CG-GCGGCgCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 40887 | 0.68 | 0.141214 |
Target: 5'- cCGCAUgGCGCcGUCGCCugaucgcuggaaagGCGCaGCCGc -3' miRNA: 3'- -GCGUAgCGCGcCGGCGG--------------CGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 3333 | 0.68 | 0.138684 |
Target: 5'- -aCGUCuGCGC-GCCGCCggcgccgcGCGCGGUCGa -3' miRNA: 3'- gcGUAG-CGCGcCGGCGG--------CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29188 | 0.68 | 0.138684 |
Target: 5'- uCGUGcCGCGCGGUcaCGCuCGaCGCaGGCCGg -3' miRNA: 3'- -GCGUaGCGCGCCG--GCG-GC-GCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30275 | 0.68 | 0.138684 |
Target: 5'- aGCGcUGCGCaaucgGGCCG-CGCGCGGCa- -3' miRNA: 3'- gCGUaGCGCG-----CCGGCgGCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19026 | 0.68 | 0.138684 |
Target: 5'- uCGCGUaGCGaCGGCCGauGCGC-GCCGc -3' miRNA: 3'- -GCGUAgCGC-GCCGGCggCGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16766 | 0.68 | 0.138684 |
Target: 5'- --aGUCGCGCcugacGGCCGCCG-GCGuaucGCCGg -3' miRNA: 3'- gcgUAGCGCG-----CCGGCGGCgCGC----CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19874 | 0.68 | 0.138684 |
Target: 5'- gGCga-GCGCGGCga--GCGCGGCCGa -3' miRNA: 3'- gCGuagCGCGCCGgcggCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 10165 | 0.68 | 0.138684 |
Target: 5'- gGCcgGUUGCGCaccGGCUGCCG-GCGGCgCGc -3' miRNA: 3'- gCG--UAGCGCG---CCGGCGGCgCGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 10707 | 0.69 | 0.135142 |
Target: 5'- gCGCGaCGCGauGCaCGUCGCGCaGCCa -3' miRNA: 3'- -GCGUaGCGCgcCG-GCGGCGCGcCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19750 | 0.69 | 0.135142 |
Target: 5'- gCGCuggCGCGCuGGCgGCgCuCGUGGCCGu -3' miRNA: 3'- -GCGua-GCGCG-CCGgCG-GcGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 8383 | 0.69 | 0.135142 |
Target: 5'- uCGCcagGUCGaCGCGGC--CCGCGCcGGCCa -3' miRNA: 3'- -GCG---UAGC-GCGCCGgcGGCGCG-CCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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