miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 9804 0.67 0.174577
Target:  5'- uCGCcgCGUGCGGCauaGCCuucGUGCGGauuCGg -3'
miRNA:   3'- -GCGuaGCGCGCCGg--CGG---CGCGCCg--GC- -5'
24284 3' -66.7 NC_005263.2 + 10165 0.68 0.138684
Target:  5'- gGCcgGUUGCGCaccGGCUGCCG-GCGGCgCGc -3'
miRNA:   3'- gCG--UAGCGCG---CCGGCGGCgCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 10181 0.69 0.125011
Target:  5'- gCGCGaaUCGCGagcaGGCCGaaGCGCucGCCGg -3'
miRNA:   3'- -GCGU--AGCGCg---CCGGCggCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 10707 0.69 0.135142
Target:  5'- gCGCGaCGCGauGCaCGUCGCGCaGCCa -3'
miRNA:   3'- -GCGUaGCGCgcCG-GCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 10750 0.71 0.083489
Target:  5'- gCGCAcgCGCauGCGGCCGUcggcaucaaagcugCGCGCGGUCu -3'
miRNA:   3'- -GCGUa-GCG--CGCCGGCG--------------GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 10891 0.71 0.08416
Target:  5'- gCGCGUCGUgaGCGGCguauCGCCGCGCugggggauGCCGc -3'
miRNA:   3'- -GCGUAGCG--CGCCG----GCGGCGCGc-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 11791 0.66 0.213202
Target:  5'- uCGCAUgGCGCaGGaCGUCGCGUGucGCUGc -3'
miRNA:   3'- -GCGUAgCGCG-CCgGCGGCGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 11943 0.67 0.185461
Target:  5'- uCGCAccggUCGCGCaGGCCGUCGCcaaccucacuauacgGCaGGCgCGc -3'
miRNA:   3'- -GCGU----AGCGCG-CCGGCGGCG---------------CG-CCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 12112 0.66 0.208
Target:  5'- gCGCAgcggCGCGCGcGCCauuacGCgCGCuccagGCGGUCGa -3'
miRNA:   3'- -GCGUa---GCGCGC-CGG-----CG-GCG-----CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 12307 0.66 0.19743
Target:  5'- uCGUAcUUGCcgaGCGGCgccagcacguaauCGCCgGCGUGGCCGg -3'
miRNA:   3'- -GCGU-AGCG---CGCCG-------------GCGG-CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 12516 0.68 0.161776
Target:  5'- gGCuUCGCGCGGguuggcguUCGCauucacguuCGCgGCGGCCGg -3'
miRNA:   3'- gCGuAGCGCGCC--------GGCG---------GCG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 12575 0.67 0.188274
Target:  5'- cCGCc-CGCGC-GCCGCCGgGCGcaGUCGg -3'
miRNA:   3'- -GCGuaGCGCGcCGGCGGCgCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 12655 0.67 0.183606
Target:  5'- uCGaUAUCGuCGuCGGCCGgCGCGCcggGGUCGu -3'
miRNA:   3'- -GC-GUAGC-GC-GCCGGCgGCGCG---CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 13735 0.68 0.146024
Target:  5'- uGC-UCGCgGCGuuaCCGCCG-GCGGCCa -3'
miRNA:   3'- gCGuAGCG-CGCc--GGCGGCgCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 13842 0.75 0.045251
Target:  5'- uGCAUCGCGCGGUacucgggcaGCUGCGCGaGCa- -3'
miRNA:   3'- gCGUAGCGCGCCGg--------CGGCGCGC-CGgc -5'
24284 3' -66.7 NC_005263.2 + 14055 0.71 0.081944
Target:  5'- cCGCGUCGaGCGcauugaGCgCGCCGCGCcGGCCc -3'
miRNA:   3'- -GCGUAGCgCGC------CG-GCGGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 14136 0.77 0.03251
Target:  5'- cCGCAgcggccaGCGCGGCCGCCuuggcgacuucggGCcgGCGGCCGg -3'
miRNA:   3'- -GCGUag-----CGCGCCGGCGG-------------CG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14244 0.66 0.208
Target:  5'- cCGUggCGUGCgGGCUgGCuUGCgGCGGCCGg -3'
miRNA:   3'- -GCGuaGCGCG-CCGG-CG-GCG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14406 0.7 0.104052
Target:  5'- gGUGUCugGCGCGuauuGCCGCCGCGCuGcGCCa -3'
miRNA:   3'- gCGUAG--CGCGC----CGGCGGCGCG-C-CGGc -5'
24284 3' -66.7 NC_005263.2 + 14442 0.67 0.165946
Target:  5'- gGCGUgCGCGCGcGCCucuuucgaGCCGaGCGGCgGc -3'
miRNA:   3'- gCGUA-GCGCGC-CGG--------CGGCgCGCCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.