Results 61 - 80 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 14947 | 0.66 | 0.202907 |
Target: 5'- -cCGUCGCGaugcaaGG-CGCCGCGCcauGGCUGg -3' miRNA: 3'- gcGUAGCGCg-----CCgGCGGCGCG---CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 15176 | 0.71 | 0.091154 |
Target: 5'- cCGCAgugaUCGaCGCGaGCgCGCCGCGCGacGUCGg -3' miRNA: 3'- -GCGU----AGC-GCGC-CG-GCGGCGCGC--CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 15321 | 0.67 | 0.183606 |
Target: 5'- gCGCGagGCGCgGGCCGacaccgagaaccCCGaCGCGGCg- -3' miRNA: 3'- -GCGUagCGCG-CCGGC------------GGC-GCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 15558 | 0.72 | 0.073626 |
Target: 5'- gCGCAgaCGCGCGcGCugaaCGCCgaaugacgguaGCGCGGCCGg -3' miRNA: 3'- -GCGUa-GCGCGC-CG----GCGG-----------CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 15844 | 0.71 | 0.092128 |
Target: 5'- gCGCuUCGCGUGGCuCGCCGCGauucagcagaugcaGGCg- -3' miRNA: 3'- -GCGuAGCGCGCCG-GCGGCGCg-------------CCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16357 | 0.73 | 0.066121 |
Target: 5'- aCGaagCGCGCGGCCGCguCGCucggcgGCGGCCu -3' miRNA: 3'- -GCguaGCGCGCCGGCG--GCG------CGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16405 | 0.69 | 0.131684 |
Target: 5'- gGCAUCGCggguGCGGUacucggcgucggCGCUgGCGCGGCgGg -3' miRNA: 3'- gCGUAGCG----CGCCG------------GCGG-CGCGCCGgC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16493 | 0.77 | 0.02765 |
Target: 5'- uGCGcCGCGCGGCCGUCGCGacCGGCa- -3' miRNA: 3'- gCGUaGCGCGCCGGCGGCGC--GCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 16766 | 0.68 | 0.138684 |
Target: 5'- --aGUCGCGCcugacGGCCGCCG-GCGuaucGCCGg -3' miRNA: 3'- gcgUAGCGCG-----CCGGCGGCgCGC----CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 17020 | 0.67 | 0.183606 |
Target: 5'- uCGUAUCGCuCGaGCaGCgCGuCGCGGCCa -3' miRNA: 3'- -GCGUAGCGcGC-CGgCG-GC-GCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 17393 | 0.7 | 0.10683 |
Target: 5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3' miRNA: 3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 17651 | 0.73 | 0.066121 |
Target: 5'- gCGCAaCGCGaaGGCCGCCGCGCucacGCUGc -3' miRNA: 3'- -GCGUaGCGCg-CCGGCGGCGCGc---CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 17743 | 0.74 | 0.049099 |
Target: 5'- uCGCAcUCgGCGcCGGCgGCaGCGCGGCCGc -3' miRNA: 3'- -GCGU-AG-CGC-GCCGgCGgCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 17805 | 0.74 | 0.049099 |
Target: 5'- gCGCAUgGCaagGCGGCCGaggaugccgCGCGCGGCCc -3' miRNA: 3'- -GCGUAgCG---CGCCGGCg--------GCGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18135 | 0.78 | 0.024769 |
Target: 5'- gCGCugAUCGCGCugcccGCCGCUGCGCaGGCCGa -3' miRNA: 3'- -GCG--UAGCGCGc----CGGCGGCGCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18444 | 0.72 | 0.075626 |
Target: 5'- cCGCucgaggUGCGCGugaaGCaGCCGCGCGGCUGg -3' miRNA: 3'- -GCGua----GCGCGC----CGgCGGCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18801 | 0.69 | 0.119899 |
Target: 5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3' miRNA: 3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18867 | 0.71 | 0.088764 |
Target: 5'- aCGCGugccUCG-GCGcGCCGCUGCGC-GCCGa -3' miRNA: 3'- -GCGU----AGCgCGC-CGGCGGCGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 18899 | 0.68 | 0.1577 |
Target: 5'- gGCAaauaCGCGcCGGCCugcgucgagcguGaCCGCGCGGCaCGa -3' miRNA: 3'- gCGUa---GCGC-GCCGG------------C-GGCGCGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19026 | 0.68 | 0.138684 |
Target: 5'- uCGCGUaGCGaCGGCCGauGCGC-GCCGc -3' miRNA: 3'- -GCGUAgCGC-GCCGGCggCGCGcCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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