miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 19034 0.66 0.196938
Target:  5'- gCGCcuAUCGCGCcguagcgGGCCGCguCGUGCuauccaaGGCCGc -3'
miRNA:   3'- -GCG--UAGCGCG-------CCGGCG--GCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19061 0.74 0.049636
Target:  5'- aCGCGcCGCGCGGCCuGCgCGCGCuggugcgucuugcagGGCUGg -3'
miRNA:   3'- -GCGUaGCGCGCCGG-CG-GCGCG---------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19149 0.69 0.125011
Target:  5'- gCGCGUCGuCGUGaccgugcauCCGCCgGCGCGGCuCGu -3'
miRNA:   3'- -GCGUAGC-GCGCc--------GGCGG-CGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 19750 0.69 0.135142
Target:  5'- gCGCuggCGCGCuGGCgGCgCuCGUGGCCGu -3'
miRNA:   3'- -GCGua-GCGCG-CCGgCG-GcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19874 0.68 0.138684
Target:  5'- gGCga-GCGCGGCga--GCGCGGCCGa -3'
miRNA:   3'- gCGuagCGCGCCGgcggCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20133 0.67 0.170213
Target:  5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3'
miRNA:   3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 20391 0.67 0.168923
Target:  5'- uGCcUCGaccgagcaagccuaUGCGGCCGCCGgCGcCGGCgCGc -3'
miRNA:   3'- gCGuAGC--------------GCGCCGGCGGC-GC-GCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 20662 0.69 0.118033
Target:  5'- cCGC-UCGuCGCGGCCGUCGaaagcguguucgGCGGCgCGa -3'
miRNA:   3'- -GCGuAGC-GCGCCGGCGGCg-----------CGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 20719 0.78 0.026679
Target:  5'- aCGCAgccggucagCGCGcCGGCCGCCGCcgcgccgcucgcugGCGGCCu -3'
miRNA:   3'- -GCGUa--------GCGC-GCCGGCGGCG--------------CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 20823 0.66 0.208
Target:  5'- uGCAg-GCGCGGCUcgGCCucGCGCaGUCGg -3'
miRNA:   3'- gCGUagCGCGCCGG--CGG--CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20956 0.69 0.131684
Target:  5'- gGCcgCGCGCugucGGacauCGCCGaCGCGGCUGc -3'
miRNA:   3'- gCGuaGCGCG----CCg---GCGGC-GCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 21390 0.71 0.096121
Target:  5'- gCGCuUCGCGCuGCCGCagGC-CGGCCu -3'
miRNA:   3'- -GCGuAGCGCGcCGGCGg-CGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 21433 0.75 0.042851
Target:  5'- gCGCAUCaauGgGCGGCCGUCGCGCguaucuggaacGGCCc -3'
miRNA:   3'- -GCGUAG---CgCGCCGGCGGCGCG-----------CCGGc -5'
24284 3' -66.7 NC_005263.2 + 21836 0.67 0.174136
Target:  5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3'
miRNA:   3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 21911 1.07 0.000119
Target:  5'- cCGCAUCGCGCGGCCGCCGCGCGGCCGc -3'
miRNA:   3'- -GCGUAGCGCGCCGGCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 22095 0.68 0.161776
Target:  5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3'
miRNA:   3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 22212 0.71 0.093606
Target:  5'- aCGUA-CGuCGCGGCCGUCGC-CGGCg- -3'
miRNA:   3'- -GCGUaGC-GCGCCGGCGGCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 22389 0.73 0.059197
Target:  5'- gGCAUCGgGCaGGCCGCgaacguaCGCGCcGCCGu -3'
miRNA:   3'- gCGUAGCgCG-CCGGCG-------GCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 22490 0.67 0.165946
Target:  5'- --uGUCGCcgGCGGCgGCCG-GCGGCgGu -3'
miRNA:   3'- gcgUAGCG--CGCCGgCGGCgCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 22679 0.77 0.031718
Target:  5'- gCGguUCGUGCGGCCGCCGa-CGGuuGa -3'
miRNA:   3'- -GCguAGCGCGCCGGCGGCgcGCCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.