miRNA display CGI


Results 101 - 120 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 23142 0.67 0.165946
Target:  5'- aGCAUCGUGuuGCCGaucugcgaaCCGCGCaccGCCGu -3'
miRNA:   3'- gCGUAGCGCgcCGGC---------GGCGCGc--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 23554 0.67 0.179041
Target:  5'- cCGUggCGCaGCcGCCGCCGCcCGcGCCGc -3'
miRNA:   3'- -GCGuaGCG-CGcCGGCGGCGcGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 23787 0.66 0.213202
Target:  5'- uGCGgaaUUGCGauGCCcguGCCG-GCGGCCGu -3'
miRNA:   3'- gCGU---AGCGCgcCGG---CGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 23920 0.66 0.213202
Target:  5'- gCGCAUCGCuugGUGGCUGauGCuCGGCgGg -3'
miRNA:   3'- -GCGUAGCG---CGCCGGCggCGcGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 24014 0.67 0.179041
Target:  5'- gGCA---CGUaGCCGCCGC-CGGCCGg -3'
miRNA:   3'- gCGUagcGCGcCGGCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 24309 0.66 0.213202
Target:  5'- gGC-UCGCGCGcGUCGCauCG-GCGGUCGu -3'
miRNA:   3'- gCGuAGCGCGC-CGGCG--GCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 24530 0.72 0.073626
Target:  5'- aCGUAUCGgGCaacGGCgGCgGCGCGGgCGg -3'
miRNA:   3'- -GCGUAGCgCG---CCGgCGgCGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 24787 0.71 0.093606
Target:  5'- gGCGUCG-GCGGCuCGCCGgGCG-UCGg -3'
miRNA:   3'- gCGUAGCgCGCCG-GCGGCgCGCcGGC- -5'
24284 3' -66.7 NC_005263.2 + 25590 0.69 0.117725
Target:  5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3'
miRNA:   3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 25876 0.68 0.149826
Target:  5'- gGCGUCGCaaccgGGCCgacGCCgGCGaCGGCCGc -3'
miRNA:   3'- gCGUAGCGcg---CCGG---CGG-CGC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26192 0.79 0.020424
Target:  5'- uGCGgcCGCGCGGCgGCCGCgcgaugcgGCGGCCGu -3'
miRNA:   3'- gCGUa-GCGCGCCGgCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26241 0.68 0.146024
Target:  5'- aGCGUCuuGcCGGCCGUCGCgaacGCGGCg- -3'
miRNA:   3'- gCGUAGcgC-GCCGGCGGCG----CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 26304 0.66 0.202907
Target:  5'- uGC-UCGC-CGGCCaGCUGCa-GGCCGg -3'
miRNA:   3'- gCGuAGCGcGCCGG-CGGCGcgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26458 0.67 0.183606
Target:  5'- gCGCuuggUGCGCGaGUgccauaCGCCGCGCGucGCCGc -3'
miRNA:   3'- -GCGua--GCGCGC-CG------GCGGCGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 26515 0.66 0.223944
Target:  5'- uGUugCGCGCGGCgucgaCGCCG-GCGGCg- -3'
miRNA:   3'- gCGuaGCGCGCCG-----GCGGCgCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 26860 0.67 0.183606
Target:  5'- aGCAcUGCGCGGCuacuucguCGCCGgUGaCGGCUGc -3'
miRNA:   3'- gCGUaGCGCGCCG--------GCGGC-GC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26932 0.67 0.174577
Target:  5'- gCGCGUC-CGCGuCCGCCcCGUGGCg- -3'
miRNA:   3'- -GCGUAGcGCGCcGGCGGcGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 27044 0.71 0.086432
Target:  5'- aGCAggaUGCGCGGCCGCC-CGuCGGgCa -3'
miRNA:   3'- gCGUa--GCGCGCCGGCGGcGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 27144 0.66 0.218517
Target:  5'- cCGCGUCgGCGauGuCCGacagCGCGCGcGCCGu -3'
miRNA:   3'- -GCGUAG-CGCgcC-GGCg---GCGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 27260 0.67 0.183606
Target:  5'- aCGC-UCGCGUcgaauuGGcCCGaCUGCGCgaGGCCGa -3'
miRNA:   3'- -GCGuAGCGCG------CC-GGC-GGCGCG--CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.