miRNA display CGI


Results 121 - 140 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 27379 0.69 0.118652
Target:  5'- gCGCggCG-GCGGCCGgCGCGCuGaCCGg -3'
miRNA:   3'- -GCGuaGCgCGCCGGCgGCGCGcC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 27444 0.68 0.146024
Target:  5'- aCGCuuUCGa-CGGCCGCgacgagcgGCGCGGCCa -3'
miRNA:   3'- -GCGu-AGCgcGCCGGCGg-------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 27685 0.7 0.10683
Target:  5'- cCGCcuucUUGUGCGcGCCGgCGCcgGCGGCCGc -3'
miRNA:   3'- -GCGu---AGCGCGC-CGGCgGCG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27791 0.69 0.131342
Target:  5'- uGCuUCGCGCGGUacauCGCCGUcgugaucGCGGCg- -3'
miRNA:   3'- gCGuAGCGCGCCG----GCGGCG-------CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 27984 0.66 0.213202
Target:  5'- -cCGUCGCGCuuGCCGUaacccUGCGCGGCg- -3'
miRNA:   3'- gcGUAGCGCGc-CGGCG-----GCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 28068 0.71 0.086432
Target:  5'- uCGCAcucaaCGCGCGGCaCGaucccguguguUgGCGCGGCCGa -3'
miRNA:   3'- -GCGUa----GCGCGCCG-GC-----------GgCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 28230 0.7 0.104052
Target:  5'- uGCAUCGgcCGCGcUCGCCGCGCucGCCGu -3'
miRNA:   3'- gCGUAGC--GCGCcGGCGGCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 28678 0.68 0.144901
Target:  5'- uCGUAUCGaGCGGCaCGCCgaacaccucaacgcGCGCGuuGCCGu -3'
miRNA:   3'- -GCGUAGCgCGCCG-GCGG--------------CGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 28933 0.72 0.073626
Target:  5'- ----aCGCGCGGCCacgaGCCGCGCcGGCgGa -3'
miRNA:   3'- gcguaGCGCGCCGG----CGGCGCG-CCGgC- -5'
24284 3' -66.7 NC_005263.2 + 28978 0.71 0.096121
Target:  5'- gCGCAagCGCcCGGCgaugCGCUcgGCGCGGCCGa -3'
miRNA:   3'- -GCGUa-GCGcGCCG----GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29020 0.72 0.073626
Target:  5'- uGCGUUGCGCaccgcgacGCCGUacugaCGCGCGGCCu -3'
miRNA:   3'- gCGUAGCGCGc-------CGGCG-----GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 29038 0.75 0.044035
Target:  5'- aCGCAccaGCGCGcGCagGCCGCGCGGCgCGu -3'
miRNA:   3'- -GCGUag-CGCGC-CGg-CGGCGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 29076 0.66 0.208
Target:  5'- gGCggCGCGCaucGGCCGUCGCuacGCGaGUCa -3'
miRNA:   3'- gCGuaGCGCG---CCGGCGGCG---CGC-CGGc -5'
24284 3' -66.7 NC_005263.2 + 29188 0.68 0.138684
Target:  5'- uCGUGcCGCGCGGUcaCGCuCGaCGCaGGCCGg -3'
miRNA:   3'- -GCGUaGCGCGCCG--GCG-GC-GCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29270 0.71 0.086432
Target:  5'- aCGCgGUCGaaCGCGGCaaugaGCUGCacgGCGGCCGg -3'
miRNA:   3'- -GCG-UAGC--GCGCCGg----CGGCG---CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29517 0.71 0.088764
Target:  5'- gGCGUC-CGuCGGCgCGCCaGCaGUGGCCGg -3'
miRNA:   3'- gCGUAGcGC-GCCG-GCGG-CG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29624 0.7 0.115285
Target:  5'- aCGguUCGCccuGCaGCCaaaggguguaccaGCCGCGCGGCUGc -3'
miRNA:   3'- -GCguAGCG---CGcCGG-------------CGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 30275 0.68 0.138684
Target:  5'- aGCGcUGCGCaaucgGGCCG-CGCGCGGCa- -3'
miRNA:   3'- gCGUaGCGCG-----CCGGCgGCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 30290 0.68 0.153717
Target:  5'- aCGUGUC-CGCGacagCGCCggGCGCGGCCGg -3'
miRNA:   3'- -GCGUAGcGCGCcg--GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 30337 0.72 0.071676
Target:  5'- uGCGagaaGCGCGuGCCGa-GCGCGGCCGc -3'
miRNA:   3'- gCGUag--CGCGC-CGGCggCGCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.