miRNA display CGI


Results 141 - 160 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 30451 0.66 0.213202
Target:  5'- aGCGUgaGCGCGGCgGCCuuCGCGuugcGCCa -3'
miRNA:   3'- gCGUAg-CGCGCCGgCGGc-GCGC----CGGc -5'
24284 3' -66.7 NC_005263.2 + 30515 0.68 0.161776
Target:  5'- gCGCGUCGUGaccCCGCUGCGCGaGCa- -3'
miRNA:   3'- -GCGUAGCGCgccGGCGGCGCGC-CGgc -5'
24284 3' -66.7 NC_005263.2 + 30713 0.7 0.115587
Target:  5'- cCGCcaggCGCGCGGCCGC-GC-CGGCa- -3'
miRNA:   3'- -GCGua--GCGCGCCGGCGgCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 31248 0.7 0.112596
Target:  5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3'
miRNA:   3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 31512 0.68 0.144901
Target:  5'- uGCucgCGCGCGagcccggcgaacgcGUCGCCGC-CGGCCu -3'
miRNA:   3'- gCGua-GCGCGC--------------CGGCGGCGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 31553 0.71 0.081725
Target:  5'- gGCGUCGCugcccagGCGGCgCGCCGUGCucgacaacGCCGa -3'
miRNA:   3'- gCGUAGCG-------CGCCG-GCGGCGCGc-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 31612 0.7 0.101342
Target:  5'- uGCcgGUCGCGaCGGCCGCgCGgCGCaGcGCCGu -3'
miRNA:   3'- gCG--UAGCGC-GCCGGCG-GC-GCG-C-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 31711 0.67 0.167641
Target:  5'- cCGCAcccgCGaUGCcggccagcuucaucaGGCCGCCGCcgagcgacGCGGCCGc -3'
miRNA:   3'- -GCGUa---GC-GCG---------------CCGGCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 32659 0.66 0.218517
Target:  5'- uCGCucauuUCGCGCuGCC-UCGCGCcguaccuguacGGCCGg -3'
miRNA:   3'- -GCGu----AGCGCGcCGGcGGCGCG-----------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 32740 0.72 0.069776
Target:  5'- aCGUA-CGCGCuGCCGCuUGCGCGGCg- -3'
miRNA:   3'- -GCGUaGCGCGcCGGCG-GCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 32908 0.66 0.218517
Target:  5'- gGCGUCG-GCGGcCCGCUGaC-CGGCUu -3'
miRNA:   3'- gCGUAGCgCGCC-GGCGGC-GcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 32919 0.68 0.161776
Target:  5'- cCGaCGUCGCGCGGCgGCuCGCGuCGaUCa -3'
miRNA:   3'- -GC-GUAGCGCGCCGgCG-GCGC-GCcGGc -5'
24284 3' -66.7 NC_005263.2 + 33640 0.68 0.153717
Target:  5'- uGC-UCGaagGCGuGCCGCCGCuCGGCuCGa -3'
miRNA:   3'- gCGuAGCg--CGC-CGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 33846 0.76 0.038418
Target:  5'- gCGCGUUGCGcCGGCCGCCGCaa-GCCa -3'
miRNA:   3'- -GCGUAGCGC-GCCGGCGGCGcgcCGGc -5'
24284 3' -66.7 NC_005263.2 + 33932 0.73 0.062146
Target:  5'- aGCAgcUCGCGCacaccGGCCGCCGgCccgaagucgccaagGCGGCCGc -3'
miRNA:   3'- gCGU--AGCGCG-----CCGGCGGC-G--------------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 33993 0.75 0.045251
Target:  5'- gGCuacgAUCGCGaCGGCgacCGCCGCGCaGCCGg -3'
miRNA:   3'- gCG----UAGCGC-GCCG---GCGGCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 34063 0.72 0.077678
Target:  5'- gCGC-UCGaCGCGG-CGCC-CGUGGCCGa -3'
miRNA:   3'- -GCGuAGC-GCGCCgGCGGcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 35541 0.7 0.101342
Target:  5'- gGCggCGCGCgGGCgggcgcuacggCGCCGC-CGGCCGc -3'
miRNA:   3'- gCGuaGCGCG-CCG-----------GCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 35629 0.71 0.096121
Target:  5'- cCGCAaugCGCGCcGCCGguaucguguuCCGCGCGGgCGa -3'
miRNA:   3'- -GCGUa--GCGCGcCGGC----------GGCGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 35749 0.7 0.112596
Target:  5'- aGCGUagGCGCGGgCGCgGUuacuGCGGCUGg -3'
miRNA:   3'- gCGUAg-CGCGCCgGCGgCG----CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.