miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 40938 0.7 0.098699
Target:  5'- gGUAUCGCaGCGGCgaugGCCGCGCaauagGGUCGc -3'
miRNA:   3'- gCGUAGCG-CGCCGg---CGGCGCG-----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 40887 0.68 0.141214
Target:  5'- cCGCAUgGCGCcGUCGCCugaucgcuggaaagGCGCaGCCGc -3'
miRNA:   3'- -GCGUAgCGCGcCGGCGG--------------CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 40804 0.67 0.174577
Target:  5'- gCGCAUCGCGCagaccuGGCCGCaggcaCGCGUcauGUCGc -3'
miRNA:   3'- -GCGUAGCGCG------CCGGCG-----GCGCGc--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 40402 0.68 0.142311
Target:  5'- uGCuaacgGUGCacaCGCCGCGCGGCCGa -3'
miRNA:   3'- gCGuag--CGCGccgGCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 40058 0.66 0.223944
Target:  5'- aCGgAacUCGCGCGG-CGCCacgGCGCGGaCGc -3'
miRNA:   3'- -GCgU--AGCGCGCCgGCGG---CGCGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 39891 0.67 0.170213
Target:  5'- gGgGUCGC-CGGCUGUCGaaGCGGUCGu -3'
miRNA:   3'- gCgUAGCGcGCCGGCGGCg-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39700 0.66 0.223944
Target:  5'- gGCGagCGCGagcuggaaaUGGCCGgCGCG-GGCCGc -3'
miRNA:   3'- gCGUa-GCGC---------GCCGGCgGCGCgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39268 0.68 0.142311
Target:  5'- aGCugCGCGCGaugcuugaucGCaCGCCGaGCGGCCGg -3'
miRNA:   3'- gCGuaGCGCGC----------CG-GCGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39245 0.68 0.149826
Target:  5'- aCGCAUaGCGgGGCucgCGCCcCGCGcGCCGc -3'
miRNA:   3'- -GCGUAgCGCgCCG---GCGGcGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 39218 0.7 0.116804
Target:  5'- aGUAUUGCGCGcGCUgcaccggcagcacggGCCGCGUaucccgucGGCCGa -3'
miRNA:   3'- gCGUAGCGCGC-CGG---------------CGGCGCG--------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39087 0.69 0.129648
Target:  5'- uCGcCGUCGCGCGGCaCGaaaauccugugggaCGUGgUGGCCGg -3'
miRNA:   3'- -GC-GUAGCGCGCCG-GCg-------------GCGC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38714 0.65 0.227811
Target:  5'- -uCGUCGagcaGCuGGCCGCCGCGCuGaaauucccgcagccGCCGg -3'
miRNA:   3'- gcGUAGCg---CG-CCGGCGGCGCG-C--------------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 38648 0.66 0.197922
Target:  5'- cCGCGUCGCGCaucgacGCCaaccucGCCaagaucaagguGCGCGGCUa -3'
miRNA:   3'- -GCGUAGCGCGc-----CGG------CGG-----------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 38573 0.74 0.050451
Target:  5'- cCGCGUCG-GUcGCUGCCGCGCacGGCCGc -3'
miRNA:   3'- -GCGUAGCgCGcCGGCGGCGCG--CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38418 0.7 0.10683
Target:  5'- gCGCGUCGgGUGcGCCGgCGUGacgcCGGCCa -3'
miRNA:   3'- -GCGUAGCgCGC-CGGCgGCGC----GCCGGc -5'
24284 3' -66.7 NC_005263.2 + 38370 0.66 0.197922
Target:  5'- gCGCcUCGaagGCGuGCCGCC-CGaGGCCGa -3'
miRNA:   3'- -GCGuAGCg--CGC-CGGCGGcGCgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38215 0.69 0.118652
Target:  5'- cCGC-UCGCGaUGGCCGCCGagaagcucUGCgGGCUGa -3'
miRNA:   3'- -GCGuAGCGC-GCCGGCGGC--------GCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38039 0.67 0.188274
Target:  5'- cCGCGUCGCuCGGCUuCCaGUGC-GCCGa -3'
miRNA:   3'- -GCGUAGCGcGCCGGcGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37944 0.7 0.10683
Target:  5'- gGCAgccggUGCGCaaccGGCCgauGCCGCGCcGGCUGg -3'
miRNA:   3'- gCGUa----GCGCG----CCGG---CGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37821 0.7 0.10683
Target:  5'- gCGCAUCcgGCGCucauGUCGCCGaCGCGGCg- -3'
miRNA:   3'- -GCGUAG--CGCGc---CGGCGGC-GCGCCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.