Results 61 - 80 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 31711 | 0.67 | 0.167641 |
Target: 5'- cCGCAcccgCGaUGCcggccagcuucaucaGGCCGCCGCcgagcgacGCGGCCGc -3' miRNA: 3'- -GCGUa---GC-GCG---------------CCGGCGGCG--------CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31612 | 0.7 | 0.101342 |
Target: 5'- uGCcgGUCGCGaCGGCCGCgCGgCGCaGcGCCGu -3' miRNA: 3'- gCG--UAGCGC-GCCGGCG-GC-GCG-C-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31553 | 0.71 | 0.081725 |
Target: 5'- gGCGUCGCugcccagGCGGCgCGCCGUGCucgacaacGCCGa -3' miRNA: 3'- gCGUAGCG-------CGCCG-GCGGCGCGc-------CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31512 | 0.68 | 0.144901 |
Target: 5'- uGCucgCGCGCGagcccggcgaacgcGUCGCCGC-CGGCCu -3' miRNA: 3'- gCGua-GCGCGC--------------CGGCGGCGcGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31248 | 0.7 | 0.112596 |
Target: 5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3' miRNA: 3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30713 | 0.7 | 0.115587 |
Target: 5'- cCGCcaggCGCGCGGCCGC-GC-CGGCa- -3' miRNA: 3'- -GCGua--GCGCGCCGGCGgCGcGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30515 | 0.68 | 0.161776 |
Target: 5'- gCGCGUCGUGaccCCGCUGCGCGaGCa- -3' miRNA: 3'- -GCGUAGCGCgccGGCGGCGCGC-CGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30451 | 0.66 | 0.213202 |
Target: 5'- aGCGUgaGCGCGGCgGCCuuCGCGuugcGCCa -3' miRNA: 3'- gCGUAg-CGCGCCGgCGGc-GCGC----CGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30337 | 0.72 | 0.071676 |
Target: 5'- uGCGagaaGCGCGuGCCGa-GCGCGGCCGc -3' miRNA: 3'- gCGUag--CGCGC-CGGCggCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30290 | 0.68 | 0.153717 |
Target: 5'- aCGUGUC-CGCGacagCGCCggGCGCGGCCGg -3' miRNA: 3'- -GCGUAGcGCGCcg--GCGG--CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30275 | 0.68 | 0.138684 |
Target: 5'- aGCGcUGCGCaaucgGGCCG-CGCGCGGCa- -3' miRNA: 3'- gCGUaGCGCG-----CCGGCgGCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29624 | 0.7 | 0.115285 |
Target: 5'- aCGguUCGCccuGCaGCCaaaggguguaccaGCCGCGCGGCUGc -3' miRNA: 3'- -GCguAGCG---CGcCGG-------------CGGCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29517 | 0.71 | 0.088764 |
Target: 5'- gGCGUC-CGuCGGCgCGCCaGCaGUGGCCGg -3' miRNA: 3'- gCGUAGcGC-GCCG-GCGG-CG-CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29270 | 0.71 | 0.086432 |
Target: 5'- aCGCgGUCGaaCGCGGCaaugaGCUGCacgGCGGCCGg -3' miRNA: 3'- -GCG-UAGC--GCGCCGg----CGGCG---CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29188 | 0.68 | 0.138684 |
Target: 5'- uCGUGcCGCGCGGUcaCGCuCGaCGCaGGCCGg -3' miRNA: 3'- -GCGUaGCGCGCCG--GCG-GC-GCG-CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29076 | 0.66 | 0.208 |
Target: 5'- gGCggCGCGCaucGGCCGUCGCuacGCGaGUCa -3' miRNA: 3'- gCGuaGCGCG---CCGGCGGCG---CGC-CGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29038 | 0.75 | 0.044035 |
Target: 5'- aCGCAccaGCGCGcGCagGCCGCGCGGCgCGu -3' miRNA: 3'- -GCGUag-CGCGC-CGg-CGGCGCGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 29020 | 0.72 | 0.073626 |
Target: 5'- uGCGUUGCGCaccgcgacGCCGUacugaCGCGCGGCCu -3' miRNA: 3'- gCGUAGCGCGc-------CGGCG-----GCGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 28978 | 0.71 | 0.096121 |
Target: 5'- gCGCAagCGCcCGGCgaugCGCUcgGCGCGGCCGa -3' miRNA: 3'- -GCGUa-GCGcGCCG----GCGG--CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 28933 | 0.72 | 0.073626 |
Target: 5'- ----aCGCGCGGCCacgaGCCGCGCcGGCgGa -3' miRNA: 3'- gcguaGCGCGCCGG----CGGCGCG-CCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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