Results 81 - 100 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 28678 | 0.68 | 0.144901 |
Target: 5'- uCGUAUCGaGCGGCaCGCCgaacaccucaacgcGCGCGuuGCCGu -3' miRNA: 3'- -GCGUAGCgCGCCG-GCGG--------------CGCGC--CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 28230 | 0.7 | 0.104052 |
Target: 5'- uGCAUCGgcCGCGcUCGCCGCGCucGCCGu -3' miRNA: 3'- gCGUAGC--GCGCcGGCGGCGCGc-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 28068 | 0.71 | 0.086432 |
Target: 5'- uCGCAcucaaCGCGCGGCaCGaucccguguguUgGCGCGGCCGa -3' miRNA: 3'- -GCGUa----GCGCGCCG-GC-----------GgCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27984 | 0.66 | 0.213202 |
Target: 5'- -cCGUCGCGCuuGCCGUaacccUGCGCGGCg- -3' miRNA: 3'- gcGUAGCGCGc-CGGCG-----GCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27791 | 0.69 | 0.131342 |
Target: 5'- uGCuUCGCGCGGUacauCGCCGUcgugaucGCGGCg- -3' miRNA: 3'- gCGuAGCGCGCCG----GCGGCG-------CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27685 | 0.7 | 0.10683 |
Target: 5'- cCGCcuucUUGUGCGcGCCGgCGCcgGCGGCCGc -3' miRNA: 3'- -GCGu---AGCGCGC-CGGCgGCG--CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27444 | 0.68 | 0.146024 |
Target: 5'- aCGCuuUCGa-CGGCCGCgacgagcgGCGCGGCCa -3' miRNA: 3'- -GCGu-AGCgcGCCGGCGg-------CGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27379 | 0.69 | 0.118652 |
Target: 5'- gCGCggCG-GCGGCCGgCGCGCuGaCCGg -3' miRNA: 3'- -GCGuaGCgCGCCGGCgGCGCGcC-GGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27260 | 0.67 | 0.183606 |
Target: 5'- aCGC-UCGCGUcgaauuGGcCCGaCUGCGCgaGGCCGa -3' miRNA: 3'- -GCGuAGCGCG------CC-GGC-GGCGCG--CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27144 | 0.66 | 0.218517 |
Target: 5'- cCGCGUCgGCGauGuCCGacagCGCGCGcGCCGu -3' miRNA: 3'- -GCGUAG-CGCgcC-GGCg---GCGCGC-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27044 | 0.71 | 0.086432 |
Target: 5'- aGCAggaUGCGCGGCCGCC-CGuCGGgCa -3' miRNA: 3'- gCGUa--GCGCGCCGGCGGcGC-GCCgGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26932 | 0.67 | 0.174577 |
Target: 5'- gCGCGUC-CGCGuCCGCCcCGUGGCg- -3' miRNA: 3'- -GCGUAGcGCGCcGGCGGcGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26860 | 0.67 | 0.183606 |
Target: 5'- aGCAcUGCGCGGCuacuucguCGCCGgUGaCGGCUGc -3' miRNA: 3'- gCGUaGCGCGCCG--------GCGGC-GC-GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26515 | 0.66 | 0.223944 |
Target: 5'- uGUugCGCGCGGCgucgaCGCCG-GCGGCg- -3' miRNA: 3'- gCGuaGCGCGCCG-----GCGGCgCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26458 | 0.67 | 0.183606 |
Target: 5'- gCGCuuggUGCGCGaGUgccauaCGCCGCGCGucGCCGc -3' miRNA: 3'- -GCGua--GCGCGC-CG------GCGGCGCGC--CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26304 | 0.66 | 0.202907 |
Target: 5'- uGC-UCGC-CGGCCaGCUGCa-GGCCGg -3' miRNA: 3'- gCGuAGCGcGCCGG-CGGCGcgCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26241 | 0.68 | 0.146024 |
Target: 5'- aGCGUCuuGcCGGCCGUCGCgaacGCGGCg- -3' miRNA: 3'- gCGUAGcgC-GCCGGCGGCG----CGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 26192 | 0.79 | 0.020424 |
Target: 5'- uGCGgcCGCGCGGCgGCCGCgcgaugcgGCGGCCGu -3' miRNA: 3'- gCGUa-GCGCGCCGgCGGCG--------CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 25876 | 0.68 | 0.149826 |
Target: 5'- gGCGUCGCaaccgGGCCgacGCCgGCGaCGGCCGc -3' miRNA: 3'- gCGUAGCGcg---CCGG---CGG-CGC-GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 25590 | 0.69 | 0.117725 |
Target: 5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3' miRNA: 3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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