Results 101 - 120 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 24787 | 0.71 | 0.093606 |
Target: 5'- gGCGUCG-GCGGCuCGCCGgGCG-UCGg -3' miRNA: 3'- gCGUAGCgCGCCG-GCGGCgCGCcGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 24530 | 0.72 | 0.073626 |
Target: 5'- aCGUAUCGgGCaacGGCgGCgGCGCGGgCGg -3' miRNA: 3'- -GCGUAGCgCG---CCGgCGgCGCGCCgGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 24309 | 0.66 | 0.213202 |
Target: 5'- gGC-UCGCGCGcGUCGCauCG-GCGGUCGu -3' miRNA: 3'- gCGuAGCGCGC-CGGCG--GCgCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 24014 | 0.67 | 0.179041 |
Target: 5'- gGCA---CGUaGCCGCCGC-CGGCCGg -3' miRNA: 3'- gCGUagcGCGcCGGCGGCGcGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 23920 | 0.66 | 0.213202 |
Target: 5'- gCGCAUCGCuugGUGGCUGauGCuCGGCgGg -3' miRNA: 3'- -GCGUAGCG---CGCCGGCggCGcGCCGgC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 23787 | 0.66 | 0.213202 |
Target: 5'- uGCGgaaUUGCGauGCCcguGCCG-GCGGCCGu -3' miRNA: 3'- gCGU---AGCGCgcCGG---CGGCgCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 23554 | 0.67 | 0.179041 |
Target: 5'- cCGUggCGCaGCcGCCGCCGCcCGcGCCGc -3' miRNA: 3'- -GCGuaGCG-CGcCGGCGGCGcGC-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 23142 | 0.67 | 0.165946 |
Target: 5'- aGCAUCGUGuuGCCGaucugcgaaCCGCGCaccGCCGu -3' miRNA: 3'- gCGUAGCGCgcCGGC---------GGCGCGc--CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22679 | 0.77 | 0.031718 |
Target: 5'- gCGguUCGUGCGGCCGCCGa-CGGuuGa -3' miRNA: 3'- -GCguAGCGCGCCGGCGGCgcGCCggC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22490 | 0.67 | 0.165946 |
Target: 5'- --uGUCGCcgGCGGCgGCCG-GCGGCgGu -3' miRNA: 3'- gcgUAGCG--CGCCGgCGGCgCGCCGgC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22389 | 0.73 | 0.059197 |
Target: 5'- gGCAUCGgGCaGGCCGCgaacguaCGCGCcGCCGu -3' miRNA: 3'- gCGUAGCgCG-CCGGCG-------GCGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22212 | 0.71 | 0.093606 |
Target: 5'- aCGUA-CGuCGCGGCCGUCGC-CGGCg- -3' miRNA: 3'- -GCGUaGC-GCGCCGGCGGCGcGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 22095 | 0.68 | 0.161776 |
Target: 5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3' miRNA: 3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21911 | 1.07 | 0.000119 |
Target: 5'- cCGCAUCGCGCGGCCGCCGCGCGGCCGc -3' miRNA: 3'- -GCGUAGCGCGCCGGCGGCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21836 | 0.67 | 0.174136 |
Target: 5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3' miRNA: 3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21433 | 0.75 | 0.042851 |
Target: 5'- gCGCAUCaauGgGCGGCCGUCGCGCguaucuggaacGGCCc -3' miRNA: 3'- -GCGUAG---CgCGCCGGCGGCGCG-----------CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21390 | 0.71 | 0.096121 |
Target: 5'- gCGCuUCGCGCuGCCGCagGC-CGGCCu -3' miRNA: 3'- -GCGuAGCGCGcCGGCGg-CGcGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20956 | 0.69 | 0.131684 |
Target: 5'- gGCcgCGCGCugucGGacauCGCCGaCGCGGCUGc -3' miRNA: 3'- gCGuaGCGCG----CCg---GCGGC-GCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20823 | 0.66 | 0.208 |
Target: 5'- uGCAg-GCGCGGCUcgGCCucGCGCaGUCGg -3' miRNA: 3'- gCGUagCGCGCCGG--CGG--CGCGcCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20719 | 0.78 | 0.026679 |
Target: 5'- aCGCAgccggucagCGCGcCGGCCGCCGCcgcgccgcucgcugGCGGCCu -3' miRNA: 3'- -GCGUa--------GCGC-GCCGGCGGCG--------------CGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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