miRNA display CGI


Results 121 - 140 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 20662 0.69 0.118033
Target:  5'- cCGC-UCGuCGCGGCCGUCGaaagcguguucgGCGGCgCGa -3'
miRNA:   3'- -GCGuAGC-GCGCCGGCGGCg-----------CGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 20391 0.67 0.168923
Target:  5'- uGCcUCGaccgagcaagccuaUGCGGCCGCCGgCGcCGGCgCGc -3'
miRNA:   3'- gCGuAGC--------------GCGCCGGCGGC-GC-GCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 20133 0.67 0.170213
Target:  5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3'
miRNA:   3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 19874 0.68 0.138684
Target:  5'- gGCga-GCGCGGCga--GCGCGGCCGa -3'
miRNA:   3'- gCGuagCGCGCCGgcggCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19750 0.69 0.135142
Target:  5'- gCGCuggCGCGCuGGCgGCgCuCGUGGCCGu -3'
miRNA:   3'- -GCGua-GCGCG-CCGgCG-GcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19149 0.69 0.125011
Target:  5'- gCGCGUCGuCGUGaccgugcauCCGCCgGCGCGGCuCGu -3'
miRNA:   3'- -GCGUAGC-GCGCc--------GGCGG-CGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 19061 0.74 0.049636
Target:  5'- aCGCGcCGCGCGGCCuGCgCGCGCuggugcgucuugcagGGCUGg -3'
miRNA:   3'- -GCGUaGCGCGCCGG-CG-GCGCG---------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19034 0.66 0.196938
Target:  5'- gCGCcuAUCGCGCcguagcgGGCCGCguCGUGCuauccaaGGCCGc -3'
miRNA:   3'- -GCG--UAGCGCG-------CCGGCG--GCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19026 0.68 0.138684
Target:  5'- uCGCGUaGCGaCGGCCGauGCGC-GCCGc -3'
miRNA:   3'- -GCGUAgCGC-GCCGGCggCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18899 0.68 0.1577
Target:  5'- gGCAaauaCGCGcCGGCCugcgucgagcguGaCCGCGCGGCaCGa -3'
miRNA:   3'- gCGUa---GCGC-GCCGG------------C-GGCGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 18867 0.71 0.088764
Target:  5'- aCGCGugccUCG-GCGcGCCGCUGCGC-GCCGa -3'
miRNA:   3'- -GCGU----AGCgCGC-CGGCGGCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18801 0.69 0.119899
Target:  5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3'
miRNA:   3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 18444 0.72 0.075626
Target:  5'- cCGCucgaggUGCGCGugaaGCaGCCGCGCGGCUGg -3'
miRNA:   3'- -GCGua----GCGCGC----CGgCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18135 0.78 0.024769
Target:  5'- gCGCugAUCGCGCugcccGCCGCUGCGCaGGCCGa -3'
miRNA:   3'- -GCG--UAGCGCGc----CGGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 17805 0.74 0.049099
Target:  5'- gCGCAUgGCaagGCGGCCGaggaugccgCGCGCGGCCc -3'
miRNA:   3'- -GCGUAgCG---CGCCGGCg--------GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 17743 0.74 0.049099
Target:  5'- uCGCAcUCgGCGcCGGCgGCaGCGCGGCCGc -3'
miRNA:   3'- -GCGU-AG-CGC-GCCGgCGgCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 17651 0.73 0.066121
Target:  5'- gCGCAaCGCGaaGGCCGCCGCGCucacGCUGc -3'
miRNA:   3'- -GCGUaGCGCg-CCGGCGGCGCGc---CGGC- -5'
24284 3' -66.7 NC_005263.2 + 17393 0.7 0.10683
Target:  5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3'
miRNA:   3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 17020 0.67 0.183606
Target:  5'- uCGUAUCGCuCGaGCaGCgCGuCGCGGCCa -3'
miRNA:   3'- -GCGUAGCGcGC-CGgCG-GC-GCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 16766 0.68 0.138684
Target:  5'- --aGUCGCGCcugacGGCCGCCG-GCGuaucGCCGg -3'
miRNA:   3'- gcgUAGCGCG-----CCGGCGGCgCGC----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.