Results 61 - 80 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 42016 | 0.7 | 0.10683 |
Target: 5'- gGCA--GUGCGGCCgGCCGCGCcaaGGCUu -3' miRNA: 3'- gCGUagCGCGCCGG-CGGCGCG---CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 39218 | 0.7 | 0.116804 |
Target: 5'- aGUAUUGCGCGcGCUgcaccggcagcacggGCCGCGUaucccgucGGCCGa -3' miRNA: 3'- gCGUAGCGCGC-CGG---------------CGGCGCG--------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 14136 | 0.77 | 0.03251 |
Target: 5'- cCGCAgcggccaGCGCGGCCGCCuuggcgacuucggGCcgGCGGCCGg -3' miRNA: 3'- -GCGUag-----CGCGCCGGCGG-------------CG--CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21433 | 0.75 | 0.042851 |
Target: 5'- gCGCAUCaauGgGCGGCCGUCGCGCguaucuggaacGGCCc -3' miRNA: 3'- -GCGUAG---CgCGCCGGCGGCGCG-----------CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 9519 | 0.74 | 0.047782 |
Target: 5'- gGCugaAUCGUGCGGCCG-UGCGCGGCa- -3' miRNA: 3'- gCG---UAGCGCGCCGGCgGCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 44773 | 0.73 | 0.062482 |
Target: 5'- gCGCggCGCcgGCGGCgCGCagacguugaacacCGCGCGGCCGc -3' miRNA: 3'- -GCGuaGCG--CGCCG-GCG-------------GCGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 2610 | 0.72 | 0.079784 |
Target: 5'- uCGCccaAUUGCGCgacaGGCCGaCCGCGCGGUUc -3' miRNA: 3'- -GCG---UAGCGCG----CCGGC-GGCGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 10750 | 0.71 | 0.083489 |
Target: 5'- gCGCAcgCGCauGCGGCCGUcggcaucaaagcugCGCGCGGUCu -3' miRNA: 3'- -GCGUa-GCG--CGCCGGCG--------------GCGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 46678 | 0.71 | 0.088764 |
Target: 5'- aGCcUCGCGCGcaGCCaagGCgGCGCGcGCCGa -3' miRNA: 3'- gCGuAGCGCGC--CGG---CGgCGCGC-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 21390 | 0.71 | 0.096121 |
Target: 5'- gCGCuUCGCGCuGCCGCagGC-CGGCCu -3' miRNA: 3'- -GCGuAGCGCGcCGGCGg-CGcGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 24014 | 0.67 | 0.179041 |
Target: 5'- gGCA---CGUaGCCGCCGC-CGGCCGg -3' miRNA: 3'- gCGUagcGCGcCGGCGGCGcGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 4656 | 0.67 | 0.179041 |
Target: 5'- gGCGaCGgGCaGGCCGgCGCGCgGGUCu -3' miRNA: 3'- gCGUaGCgCG-CCGGCgGCGCG-CCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 47196 | 0.69 | 0.128307 |
Target: 5'- uGCGUCGacgaguaacccgccgGCGGCgacCGCCGCGCugaacgaagcgccGGCCGg -3' miRNA: 3'- gCGUAGCg--------------CGCCG---GCGGCGCG-------------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20956 | 0.69 | 0.131684 |
Target: 5'- gGCcgCGCGCugucGGacauCGCCGaCGCGGCUGc -3' miRNA: 3'- gCGuaGCGCG----CCg---GCGGC-GCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30275 | 0.68 | 0.138684 |
Target: 5'- aGCGcUGCGCaaucgGGCCG-CGCGCGGCa- -3' miRNA: 3'- gCGUaGCGCG-----CCGGCgGCGCGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 31512 | 0.68 | 0.144901 |
Target: 5'- uGCucgCGCGCGagcccggcgaacgcGUCGCCGC-CGGCCu -3' miRNA: 3'- gCGua-GCGCGC--------------CGGCGGCGcGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 25876 | 0.68 | 0.149826 |
Target: 5'- gGCGUCGCaaccgGGCCgacGCCgGCGaCGGCCGc -3' miRNA: 3'- gCGUAGCGcg---CCGG---CGG-CGC-GCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 32919 | 0.68 | 0.161776 |
Target: 5'- cCGaCGUCGCGCGGCgGCuCGCGuCGaUCa -3' miRNA: 3'- -GC-GUAGCGCGCCGgCG-GCGC-GCcGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 20391 | 0.67 | 0.168923 |
Target: 5'- uGCcUCGaccgagcaagccuaUGCGGCCGCCGgCGcCGGCgCGc -3' miRNA: 3'- gCGuAGC--------------GCGCCGGCGGC-GC-GCCG-GC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 40804 | 0.67 | 0.174577 |
Target: 5'- gCGCAUCGCGCagaccuGGCCGCaggcaCGCGUcauGUCGc -3' miRNA: 3'- -GCGUAGCGCG------CCGGCG-----GCGCGc--CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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