miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 33 0.69 0.131684
Target:  5'- uGCGUCacugGCGCGGCagGUCGgGCGcGCCu -3'
miRNA:   3'- gCGUAG----CGCGCCGg-CGGCgCGC-CGGc -5'
24284 3' -66.7 NC_005263.2 + 10165 0.68 0.138684
Target:  5'- gGCcgGUUGCGCaccGGCUGCCG-GCGGCgCGc -3'
miRNA:   3'- gCG--UAGCGCG---CCGGCGGCgCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 40402 0.68 0.142311
Target:  5'- uGCuaacgGUGCacaCGCCGCGCGGCCGa -3'
miRNA:   3'- gCGuag--CGCGccgGCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 13735 0.68 0.146024
Target:  5'- uGC-UCGCgGCGuuaCCGCCG-GCGGCCa -3'
miRNA:   3'- gCGuAGCG-CGCc--GGCGGCgCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 42875 0.68 0.1577
Target:  5'- gCGCcugAUCGCGUcaauGGCgUGCCGCGCGcucGCCu -3'
miRNA:   3'- -GCG---UAGCGCG----CCG-GCGGCGCGC---CGGc -5'
24284 3' -66.7 NC_005263.2 + 20391 0.67 0.168923
Target:  5'- uGCcUCGaccgagcaagccuaUGCGGCCGCCGgCGcCGGCgCGc -3'
miRNA:   3'- gCGuAGC--------------GCGCCGGCGGC-GC-GCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 40804 0.67 0.174577
Target:  5'- gCGCAUCGCGCagaccuGGCCGCaggcaCGCGUcauGUCGc -3'
miRNA:   3'- -GCGUAGCGCG------CCGGCG-----GCGCGc--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 21390 0.71 0.096121
Target:  5'- gCGCuUCGCGCuGCCGCagGC-CGGCCu -3'
miRNA:   3'- -GCGuAGCGCGcCGGCGg-CGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 46678 0.71 0.088764
Target:  5'- aGCcUCGCGCGcaGCCaagGCgGCGCGcGCCGa -3'
miRNA:   3'- gCGuAGCGCGC--CGG---CGgCGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 10750 0.71 0.083489
Target:  5'- gCGCAcgCGCauGCGGCCGUcggcaucaaagcugCGCGCGGUCu -3'
miRNA:   3'- -GCGUa-GCG--CGCCGGCG--------------GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 38039 0.67 0.188274
Target:  5'- cCGCGUCGCuCGGCUuCCaGUGC-GCCGa -3'
miRNA:   3'- -GCGUAGCGcGCCGGcGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19034 0.66 0.196938
Target:  5'- gCGCcuAUCGCGCcguagcgGGCCGCguCGUGCuauccaaGGCCGc -3'
miRNA:   3'- -GCG--UAGCGCG-------CCGGCG--GCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38370 0.66 0.197922
Target:  5'- gCGCcUCGaagGCGuGCCGCC-CGaGGCCGa -3'
miRNA:   3'- -GCGuAGCg--CGC-CGGCGGcGCgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 29076 0.66 0.208
Target:  5'- gGCggCGCGCaucGGCCGUCGCuacGCGaGUCa -3'
miRNA:   3'- gCGuaGCGCG---CCGGCGGCG---CGC-CGGc -5'
24284 3' -66.7 NC_005263.2 + 27984 0.66 0.213202
Target:  5'- -cCGUCGCGCuuGCCGUaacccUGCGCGGCg- -3'
miRNA:   3'- gcGUAGCGCGc-CGGCG-----GCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 14136 0.77 0.03251
Target:  5'- cCGCAgcggccaGCGCGGCCGCCuuggcgacuucggGCcgGCGGCCGg -3'
miRNA:   3'- -GCGUag-----CGCGCCGGCGG-------------CG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 21433 0.75 0.042851
Target:  5'- gCGCAUCaauGgGCGGCCGUCGCGCguaucuggaacGGCCc -3'
miRNA:   3'- -GCGUAG---CgCGCCGGCGGCGCG-----------CCGGc -5'
24284 3' -66.7 NC_005263.2 + 9519 0.74 0.047782
Target:  5'- gGCugaAUCGUGCGGCCG-UGCGCGGCa- -3'
miRNA:   3'- gCG---UAGCGCGCCGGCgGCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 44773 0.73 0.062482
Target:  5'- gCGCggCGCcgGCGGCgCGCagacguugaacacCGCGCGGCCGc -3'
miRNA:   3'- -GCGuaGCG--CGCCG-GCG-------------GCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2610 0.72 0.079784
Target:  5'- uCGCccaAUUGCGCgacaGGCCGaCCGCGCGGUUc -3'
miRNA:   3'- -GCG---UAGCGCG----CCGGC-GGCGCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.