miRNA display CGI


Results 101 - 120 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 38215 0.69 0.118652
Target:  5'- cCGC-UCGCGaUGGCCGCCGagaagcucUGCgGGCUGa -3'
miRNA:   3'- -GCGuAGCGC-GCCGGCGGC--------GCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 42875 0.68 0.1577
Target:  5'- gCGCcugAUCGCGUcaauGGCgUGCCGCGCGcucGCCu -3'
miRNA:   3'- -GCG---UAGCGCG----CCG-GCGGCGCGC---CGGc -5'
24284 3' -66.7 NC_005263.2 + 27685 0.7 0.10683
Target:  5'- cCGCcuucUUGUGCGcGCCGgCGCcgGCGGCCGc -3'
miRNA:   3'- -GCGu---AGCGCGC-CGGCgGCG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27379 0.69 0.118652
Target:  5'- gCGCggCG-GCGGCCGgCGCGCuGaCCGg -3'
miRNA:   3'- -GCGuaGCgCGCCGGCgGCGCGcC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 18801 0.69 0.119899
Target:  5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3'
miRNA:   3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 44889 0.66 0.213202
Target:  5'- gGCGUcaucggggCGgGCGGCgGCCGgGcCGGCUc -3'
miRNA:   3'- gCGUA--------GCgCGCCGgCGGCgC-GCCGGc -5'
24284 3' -66.7 NC_005263.2 + 37944 0.7 0.10683
Target:  5'- gGCAgccggUGCGCaaccGGCCgauGCCGCGCcGGCUGg -3'
miRNA:   3'- gCGUa----GCGCG----CCGG---CGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 17393 0.7 0.10683
Target:  5'- uGCcg-GCGCGGCCGCgCGCcugGCGGgCGg -3'
miRNA:   3'- gCGuagCGCGCCGGCG-GCG---CGCCgGC- -5'
24284 3' -66.7 NC_005263.2 + 25590 0.69 0.117725
Target:  5'- gGCAUCGaGCaGGCCgcagccgccgaaccGCCGC-CGGCCGc -3'
miRNA:   3'- gCGUAGCgCG-CCGG--------------CGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 28230 0.7 0.104052
Target:  5'- uGCAUCGgcCGCGcUCGCCGCGCucGCCGu -3'
miRNA:   3'- gCGUAGC--GCGCcGGCGGCGCGc-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 8739 0.69 0.118652
Target:  5'- uGCGUCGUagaaGCGcGCCGCCGCcgagcgaauCGGCUGc -3'
miRNA:   3'- gCGUAGCG----CGC-CGGCGGCGc--------GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37821 0.7 0.10683
Target:  5'- gCGCAUCcgGCGCucauGUCGCCGaCGCGGCg- -3'
miRNA:   3'- -GCGUAG--CGCGc---CGGCGGC-GCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 3462 0.67 0.165946
Target:  5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3'
miRNA:   3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 31248 0.7 0.112596
Target:  5'- uCGguUcCGCGCGGCgcggCGCCGgGCaGGUCGa -3'
miRNA:   3'- -GCguA-GCGCGCCG----GCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 21836 0.67 0.174136
Target:  5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3'
miRNA:   3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39891 0.67 0.170213
Target:  5'- gGgGUCGC-CGGCUGUCGaaGCGGUCGu -3'
miRNA:   3'- gCgUAGCGcGCCGGCGGCg-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20133 0.67 0.170213
Target:  5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3'
miRNA:   3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 43060 0.67 0.165946
Target:  5'- cCGaCGUCGgccaauaGuCGGCCGCCGgGCcGGCUGu -3'
miRNA:   3'- -GC-GUAGCg------C-GCCGGCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14947 0.66 0.202907
Target:  5'- -cCGUCGCGaugcaaGG-CGCCGCGCcauGGCUGg -3'
miRNA:   3'- gcGUAGCGCg-----CCgGCGGCGCG---CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14244 0.66 0.208
Target:  5'- cCGUggCGUGCgGGCUgGCuUGCgGCGGCCGg -3'
miRNA:   3'- -GCGuaGCGCG-CCGG-CG-GCG-CGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.