miRNA display CGI


Results 121 - 140 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 16405 0.69 0.131684
Target:  5'- gGCAUCGCggguGCGGUacucggcgucggCGCUgGCGCGGCgGg -3'
miRNA:   3'- gCGUAGCG----CGCCG------------GCGG-CGCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 18801 0.69 0.119899
Target:  5'- cCGCG-CGCGaugcgcaugccgaccCGGCCGCCGUGCaGCUc -3'
miRNA:   3'- -GCGUaGCGC---------------GCCGGCGGCGCGcCGGc -5'
24284 3' -66.7 NC_005263.2 + 22679 0.77 0.031718
Target:  5'- gCGguUCGUGCGGCCGCCGa-CGGuuGa -3'
miRNA:   3'- -GCguAGCGCGCCGGCGGCgcGCCggC- -5'
24284 3' -66.7 NC_005263.2 + 41543 0.76 0.037382
Target:  5'- gCGCAaaCGCGCGGCgCGCCGUgGCGGCg- -3'
miRNA:   3'- -GCGUa-GCGCGCCG-GCGGCG-CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 33993 0.75 0.045251
Target:  5'- gGCuacgAUCGCGaCGGCgacCGCCGCGCaGCCGg -3'
miRNA:   3'- gCG----UAGCGC-GCCG---GCGGCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 17743 0.74 0.049099
Target:  5'- uCGCAcUCgGCGcCGGCgGCaGCGCGGCCGc -3'
miRNA:   3'- -GCGU-AG-CGC-GCCGgCGgCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 42561 0.74 0.049099
Target:  5'- uGCAuUCGCGCcaGGCCGuuGC-CGGCCa -3'
miRNA:   3'- gCGU-AGCGCG--CCGGCggCGcGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 17805 0.74 0.049099
Target:  5'- gCGCAUgGCaagGCGGCCGaggaugccgCGCGCGGCCc -3'
miRNA:   3'- -GCGUAgCG---CGCCGGCg--------GCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 19061 0.74 0.049636
Target:  5'- aCGCGcCGCGCGGCCuGCgCGCGCuggugcgucuugcagGGCUGg -3'
miRNA:   3'- -GCGUaGCGCGCCGG-CG-GCGCG---------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 16493 0.77 0.02765
Target:  5'- uGCGcCGCGCGGCCGUCGCGacCGGCa- -3'
miRNA:   3'- gCGUaGCGCGCCGGCGGCGC--GCCGgc -5'
24284 3' -66.7 NC_005263.2 + 26192 0.79 0.020424
Target:  5'- uGCGgcCGCGCGGCgGCCGCgcgaugcgGCGGCCGu -3'
miRNA:   3'- gCGUa-GCGCGCCGgCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 8739 0.69 0.118652
Target:  5'- uGCGUCGUagaaGCGcGCCGCCGCcgagcgaauCGGCUGc -3'
miRNA:   3'- gCGUAGCG----CGC-CGGCGGCGc--------GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 15321 0.67 0.183606
Target:  5'- gCGCGagGCGCgGGCCGacaccgagaaccCCGaCGCGGCg- -3'
miRNA:   3'- -GCGUagCGCG-CCGGC------------GGC-GCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 37335 0.67 0.180855
Target:  5'- aGCAgaccgCGCGCagcuuugaugccgacGGCCGCaUGCGCGuGCgCGa -3'
miRNA:   3'- gCGUa----GCGCG---------------CCGGCG-GCGCGC-CG-GC- -5'
24284 3' -66.7 NC_005263.2 + 26932 0.67 0.174577
Target:  5'- gCGCGUC-CGCGuCCGCCcCGUGGCg- -3'
miRNA:   3'- -GCGUAGcGCGCcGGCGGcGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 21836 0.67 0.174136
Target:  5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3'
miRNA:   3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39891 0.67 0.170213
Target:  5'- gGgGUCGC-CGGCUGUCGaaGCGGUCGu -3'
miRNA:   3'- gCgUAGCGcGCCGGCGGCg-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20133 0.67 0.170213
Target:  5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3'
miRNA:   3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5'
24284 3' -66.7 NC_005263.2 + 43060 0.67 0.165946
Target:  5'- cCGaCGUCGgccaauaGuCGGCCGCCGgGCcGGCUGu -3'
miRNA:   3'- -GC-GUAGCg------C-GCCGGCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3462 0.67 0.165946
Target:  5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3'
miRNA:   3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.