miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 839 0.67 0.188274
Target:  5'- gCGCAcgUCacuaccgaGCGCGGacagcguacCCGUCGUGCcGGCCGg -3'
miRNA:   3'- -GCGU--AG--------CGCGCC---------GGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 11943 0.67 0.185461
Target:  5'- uCGCAccggUCGCGCaGGCCGUCGCcaaccucacuauacgGCaGGCgCGc -3'
miRNA:   3'- -GCGU----AGCGCG-CCGGCGGCG---------------CG-CCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 30515 0.68 0.161776
Target:  5'- gCGCGUCGUGaccCCGCUGCGCGaGCa- -3'
miRNA:   3'- -GCGUAGCGCgccGGCGGCGCGC-CGgc -5'
24284 3' -66.7 NC_005263.2 + 22095 0.68 0.161776
Target:  5'- gGCAcaccaggCGUGaCGGCUGCCGC-CGGCaCGc -3'
miRNA:   3'- gCGUa------GCGC-GCCGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 36087 0.68 0.1577
Target:  5'- gCGCAagcUUGaGCGcGCCGUCGCGUugauGGCCGc -3'
miRNA:   3'- -GCGU---AGCgCGC-CGGCGGCGCG----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18899 0.68 0.1577
Target:  5'- gGCAaauaCGCGcCGGCCugcgucgagcguGaCCGCGCGGCaCGa -3'
miRNA:   3'- gCGUa---GCGC-GCCGG------------C-GGCGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 30290 0.68 0.153717
Target:  5'- aCGUGUC-CGCGacagCGCCggGCGCGGCCGg -3'
miRNA:   3'- -GCGUAGcGCGCcg--GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 33640 0.68 0.153717
Target:  5'- uGC-UCGaagGCGuGCCGCCGCuCGGCuCGa -3'
miRNA:   3'- gCGuAGCg--CGC-CGGCGGCGcGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 43500 0.68 0.149826
Target:  5'- gGCAcCuCGaaGCUGCCgGCGCGGCCGu -3'
miRNA:   3'- gCGUaGcGCgcCGGCGG-CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39245 0.68 0.149826
Target:  5'- aCGCAUaGCGgGGCucgCGCCcCGCGcGCCGc -3'
miRNA:   3'- -GCGUAgCGCgCCG---GCGGcGCGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 3462 0.67 0.165946
Target:  5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3'
miRNA:   3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 43060 0.67 0.165946
Target:  5'- cCGaCGUCGgccaauaGuCGGCCGCCGgGCcGGCUGu -3'
miRNA:   3'- -GC-GUAGCg------C-GCCGGCGGCgCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 27260 0.67 0.183606
Target:  5'- aCGC-UCGCGUcgaauuGGcCCGaCUGCGCgaGGCCGa -3'
miRNA:   3'- -GCGuAGCGCG------CC-GGC-GGCGCG--CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26860 0.67 0.183606
Target:  5'- aGCAcUGCGCGGCuacuucguCGCCGgUGaCGGCUGc -3'
miRNA:   3'- gCGUaGCGCGCCG--------GCGGC-GC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 15321 0.67 0.183606
Target:  5'- gCGCGagGCGCgGGCCGacaccgagaaccCCGaCGCGGCg- -3'
miRNA:   3'- -GCGUagCGCG-CCGGC------------GGC-GCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 37335 0.67 0.180855
Target:  5'- aGCAgaccgCGCGCagcuuugaugccgacGGCCGCaUGCGCGuGCgCGa -3'
miRNA:   3'- gCGUa----GCGCG---------------CCGGCG-GCGCGC-CG-GC- -5'
24284 3' -66.7 NC_005263.2 + 26932 0.67 0.174577
Target:  5'- gCGCGUC-CGCGuCCGCCcCGUGGCg- -3'
miRNA:   3'- -GCGUAGcGCGCcGGCGGcGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 21836 0.67 0.174136
Target:  5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3'
miRNA:   3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 39891 0.67 0.170213
Target:  5'- gGgGUCGC-CGGCUGUCGaaGCGGUCGu -3'
miRNA:   3'- gCgUAGCGcGCCGGCGGCg-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20133 0.67 0.170213
Target:  5'- gGCAagCGCGacgguaCGGCCGUCGCGcCGGgCa -3'
miRNA:   3'- gCGUa-GCGC------GCCGGCGGCGC-GCCgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.