miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 29076 0.66 0.208
Target:  5'- gGCggCGCGCaucGGCCGUCGCuacGCGaGUCa -3'
miRNA:   3'- gCGuaGCGCG---CCGGCGGCG---CGC-CGGc -5'
24284 3' -66.7 NC_005263.2 + 12112 0.66 0.208
Target:  5'- gCGCAgcggCGCGCGcGCCauuacGCgCGCuccagGCGGUCGa -3'
miRNA:   3'- -GCGUa---GCGCGC-CGG-----CG-GCG-----CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14244 0.66 0.208
Target:  5'- cCGUggCGUGCgGGCUgGCuUGCgGCGGCCGg -3'
miRNA:   3'- -GCGuaGCGCG-CCGG-CG-GCG-CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26304 0.66 0.202907
Target:  5'- uGC-UCGC-CGGCCaGCUGCa-GGCCGg -3'
miRNA:   3'- gCGuAGCGcGCCGG-CGGCGcgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 14947 0.66 0.202907
Target:  5'- -cCGUCGCGaugcaaGG-CGCCGCGCcauGGCUGg -3'
miRNA:   3'- gcGUAGCGCg-----CCgGCGGCGCG---CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 8040 0.66 0.197922
Target:  5'- gGCGUcCGCGcCGuGgCGCCGCGCGaguuCCGu -3'
miRNA:   3'- gCGUA-GCGC-GC-CgGCGGCGCGCc---GGC- -5'
24284 3' -66.7 NC_005263.2 + 38370 0.66 0.197922
Target:  5'- gCGCcUCGaagGCGuGCCGCC-CGaGGCCGa -3'
miRNA:   3'- -GCGuAGCg--CGC-CGGCGGcGCgCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46737 0.66 0.197922
Target:  5'- gCGC-UCGUucaaGGCCGCCGC-CGGCa- -3'
miRNA:   3'- -GCGuAGCGcg--CCGGCGGCGcGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 38648 0.66 0.197922
Target:  5'- cCGCGUCGCGCaucgacGCCaaccucGCCaagaucaagguGCGCGGCUa -3'
miRNA:   3'- -GCGUAGCGCGc-----CGG------CGG-----------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 35930 0.66 0.19743
Target:  5'- gGCGaCGCGCGuGCCGUUauacgucacgucaGCGaacaGGCCGa -3'
miRNA:   3'- gCGUaGCGCGC-CGGCGG-------------CGCg---CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 12307 0.66 0.19743
Target:  5'- uCGUAcUUGCcgaGCGGCgccagcacguaauCGCCgGCGUGGCCGg -3'
miRNA:   3'- -GCGU-AGCG---CGCCG-------------GCGG-CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 19034 0.66 0.196938
Target:  5'- gCGCcuAUCGCGCcguagcgGGCCGCguCGUGCuauccaaGGCCGc -3'
miRNA:   3'- -GCG--UAGCGCG-------CCGGCG--GCGCG-------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 6846 0.67 0.193045
Target:  5'- uGCAcUGCGCGGCCaucgagcggauuGCgGCGaCGGCa- -3'
miRNA:   3'- gCGUaGCGCGCCGG------------CGgCGC-GCCGgc -5'
24284 3' -66.7 NC_005263.2 + 45396 0.67 0.193045
Target:  5'- uGCAcgCGCGCuGCgcaugcaccUGCCGaGCGGCCGc -3'
miRNA:   3'- gCGUa-GCGCGcCG---------GCGGCgCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 46537 0.67 0.193045
Target:  5'- gGUAUCGa-CGGCaCGCUGU-CGGCCGg -3'
miRNA:   3'- gCGUAGCgcGCCG-GCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 37718 0.67 0.193045
Target:  5'- cCGC-UCGC-CGGCCgGCCcggcGCGUGGCgGc -3'
miRNA:   3'- -GCGuAGCGcGCCGG-CGG----CGCGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 3544 0.67 0.193045
Target:  5'- gGgAUCaGCGCaGuGCCGCgcagCGCGuCGGCCGa -3'
miRNA:   3'- gCgUAG-CGCG-C-CGGCG----GCGC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 839 0.67 0.188274
Target:  5'- gCGCAcgUCacuaccgaGCGCGGacagcguacCCGUCGUGCcGGCCGg -3'
miRNA:   3'- -GCGU--AG--------CGCGCC---------GGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 38039 0.67 0.188274
Target:  5'- cCGCGUCGCuCGGCUuCCaGUGC-GCCGa -3'
miRNA:   3'- -GCGUAGCGcGCCGGcGG-CGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 12575 0.67 0.188274
Target:  5'- cCGCc-CGCGC-GCCGCCGgGCGcaGUCGg -3'
miRNA:   3'- -GCGuaGCGCGcCGGCGGCgCGC--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.