miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 5' -57.3 NC_005263.2 + 32646 0.68 0.469968
Target:  5'- -aGCGGccgaAAGCCuuccGGAUGGCGCGggucgGCGg -3'
miRNA:   3'- caCGCC----UUCGG----CUUGCCGCGCa----UGCa -5'
24287 5' -57.3 NC_005263.2 + 5587 0.68 0.469968
Target:  5'- uGUGCGGccGUCGGgcauccgcACGGCGaggcCGUGCGg -3'
miRNA:   3'- -CACGCCuuCGGCU--------UGCCGC----GCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 24544 0.68 0.46
Target:  5'- -gGCGGcGGCgCGGGCGGCgGCGgcUGCGc -3'
miRNA:   3'- caCGCCuUCG-GCUUGCCG-CGC--AUGCa -5'
24287 5' -57.3 NC_005263.2 + 15276 0.68 0.46
Target:  5'- -cGCGGc-GCUGAAgGGCGCcgaGUACGa -3'
miRNA:   3'- caCGCCuuCGGCUUgCCGCG---CAUGCa -5'
24287 5' -57.3 NC_005263.2 + 22840 0.68 0.46
Target:  5'- -cGCGGAucggcaugcAGCUGAuCGGUGC-UGCGUa -3'
miRNA:   3'- caCGCCU---------UCGGCUuGCCGCGcAUGCA- -5'
24287 5' -57.3 NC_005263.2 + 21166 0.68 0.450145
Target:  5'- -gGCGGcuacgccacgGGGCCGGacgcggacgcgcGCGGCGCGgGCGa -3'
miRNA:   3'- caCGCC----------UUCGGCU------------UGCCGCGCaUGCa -5'
24287 5' -57.3 NC_005263.2 + 27878 0.68 0.440408
Target:  5'- -aGUGGAuaaGGCCG-GCGGCGCGcaguCGg -3'
miRNA:   3'- caCGCCU---UCGGCuUGCCGCGCau--GCa -5'
24287 5' -57.3 NC_005263.2 + 25023 0.68 0.440408
Target:  5'- -gGCGGuGGCUGcggUGGCGUGUACGc -3'
miRNA:   3'- caCGCCuUCGGCuu-GCCGCGCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 3731 0.68 0.440408
Target:  5'- -cGCGcacgccGGGCCGGAuCaGCGCGUACGUg -3'
miRNA:   3'- caCGCc-----UUCGGCUU-GcCGCGCAUGCA- -5'
24287 5' -57.3 NC_005263.2 + 24684 0.68 0.430792
Target:  5'- -cGgGGgcGCCGGuaacgGCGGCGCGccgaACGUg -3'
miRNA:   3'- caCgCCuuCGGCU-----UGCCGCGCa---UGCA- -5'
24287 5' -57.3 NC_005263.2 + 30432 0.69 0.411934
Target:  5'- gGUGCGGucGAGCgCGAGCaGCGUGaGCGc -3'
miRNA:   3'- -CACGCC--UUCG-GCUUGcCGCGCaUGCa -5'
24287 5' -57.3 NC_005263.2 + 9511 0.69 0.402699
Target:  5'- cGUGCGcGGGCUGAaucguGCGGC-CGUGCGc -3'
miRNA:   3'- -CACGCcUUCGGCU-----UGCCGcGCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 10068 0.69 0.402699
Target:  5'- -cGCacuGGAAGCCGAGCGaCGCGggcagcGCGUc -3'
miRNA:   3'- caCG---CCUUCGGCUUGCcGCGCa-----UGCA- -5'
24287 5' -57.3 NC_005263.2 + 21994 0.69 0.402699
Target:  5'- -cGCuGAcuUCGAGCGGCGCGUACc- -3'
miRNA:   3'- caCGcCUucGGCUUGCCGCGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 42054 0.69 0.384628
Target:  5'- -cGCGuGAAGCgcgccgccaaCGAACGGgGCGUGCu- -3'
miRNA:   3'- caCGC-CUUCG----------GCUUGCCgCGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 9195 0.69 0.384628
Target:  5'- -cGCGGguGCgcaaaCGGGCGGCGCucGUACGg -3'
miRNA:   3'- caCGCCuuCG-----GCUUGCCGCG--CAUGCa -5'
24287 5' -57.3 NC_005263.2 + 27349 0.69 0.375796
Target:  5'- -cGCGGccauguuacAGGCCgccagcGAGCGGCGCGgcgGCGg -3'
miRNA:   3'- caCGCC---------UUCGG------CUUGCCGCGCa--UGCa -5'
24287 5' -57.3 NC_005263.2 + 24793 0.69 0.375796
Target:  5'- -gGCGGcucGCCGGgcgucgGCGGCGCGUAUu- -3'
miRNA:   3'- caCGCCuu-CGGCU------UGCCGCGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 20411 0.69 0.375796
Target:  5'- aUGCGGccGCCGGcgcCGGCGCGcACa- -3'
miRNA:   3'- cACGCCuuCGGCUu--GCCGCGCaUGca -5'
24287 5' -57.3 NC_005263.2 + 12549 0.69 0.367102
Target:  5'- -cGCGGcGGCCG-GCGGCGcCGUaGCGc -3'
miRNA:   3'- caCGCCuUCGGCuUGCCGC-GCA-UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.