Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 27225 | 0.66 | 0.408823 |
Target: 5'- cGUGCGccuccugccacUGGCGCaGCGCCGuUGCgacgcucgCGUCGAa -3' miRNA: 3'- -UAUGC-----------ACCGCG-CGUGGC-GCG--------GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 24697 | 0.66 | 0.408823 |
Target: 5'- -aACGgcGGCGCGCcgaaCGUGCCGggCGGc -3' miRNA: 3'- uaUGCa-CCGCGCGug--GCGCGGCa-GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 6328 | 0.66 | 0.408823 |
Target: 5'- -----cGGCGCGCGagucgcCCGCGCCGaUCu- -3' miRNA: 3'- uaugcaCCGCGCGU------GGCGCGGC-AGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 27233 | 0.66 | 0.408823 |
Target: 5'- --uCGUGaGCGUG-AUCGCGCCGcCGGc -3' miRNA: 3'- uauGCAC-CGCGCgUGGCGCGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 1283 | 0.66 | 0.408823 |
Target: 5'- -cGCcUGGCGCGCGuuGCGUuaCG-CGAu -3' miRNA: 3'- uaUGcACCGCGCGUggCGCG--GCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 24142 | 0.66 | 0.39982 |
Target: 5'- uUGCGUcgcGGuUGCGaa-CGCGCUGUCGAa -3' miRNA: 3'- uAUGCA---CC-GCGCgugGCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 2253 | 0.66 | 0.39982 |
Target: 5'- uGUACGUGuaguuguucgaGCGCaGCGCguuCGCCGUCGGc -3' miRNA: 3'- -UAUGCAC-----------CGCG-CGUGgc-GCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4198 | 0.66 | 0.39982 |
Target: 5'- -aACGUGaagcaguacGCGCGCGucgaCGgGUCGUCGAg -3' miRNA: 3'- uaUGCAC---------CGCGCGUg---GCgCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 28093 | 0.66 | 0.39982 |
Target: 5'- cGUGUGuUGGCGCgGCcgAUCGCGUCGUUGAc -3' miRNA: 3'- -UAUGC-ACCGCG-CG--UGGCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 14398 | 0.66 | 0.39982 |
Target: 5'- cUGCGaaaggugucUGGCGCGUauugccGCCGCGCUG-CGc -3' miRNA: 3'- uAUGC---------ACCGCGCG------UGGCGCGGCaGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 15773 | 0.66 | 0.39982 |
Target: 5'- -gGCGUGuucaacaaaGUGCGuCGCC-CGUCGUCGAu -3' miRNA: 3'- uaUGCAC---------CGCGC-GUGGcGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 42944 | 0.66 | 0.39982 |
Target: 5'- -----aGGCGCaaACCGCGCUGcUCGAc -3' miRNA: 3'- uaugcaCCGCGcgUGGCGCGGC-AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 5472 | 0.66 | 0.390945 |
Target: 5'- -cACGUcGGCGCuGCuuCGUGCUGcUCGAc -3' miRNA: 3'- uaUGCA-CCGCG-CGugGCGCGGC-AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 12342 | 0.66 | 0.390945 |
Target: 5'- -gGCGUGGCcgguuuccucaaGCGUcucgcGCCGCGCCG-Cu- -3' miRNA: 3'- uaUGCACCG------------CGCG-----UGGCGCGGCaGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 31622 | 0.66 | 0.390945 |
Target: 5'- -gACGgccGCGCgGCGCaGCGCCGUCu- -3' miRNA: 3'- uaUGCac-CGCG-CGUGgCGCGGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 33160 | 0.66 | 0.390945 |
Target: 5'- -aGCGcGGCGCcuuGCAUCGCGacggggaUGUCGAg -3' miRNA: 3'- uaUGCaCCGCG---CGUGGCGCg------GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 47281 | 0.66 | 0.390945 |
Target: 5'- ---aGUGacGUGCGCGCCGaagcgcagucCGCUGUCGAc -3' miRNA: 3'- uaugCAC--CGCGCGUGGC----------GCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 32550 | 0.66 | 0.3822 |
Target: 5'- -gGCGUucaGcGCGCGCGuCUGCGCCGagaUUGAu -3' miRNA: 3'- uaUGCA---C-CGCGCGU-GGCGCGGC---AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 32756 | 0.66 | 0.3822 |
Target: 5'- uUGCGcGGCGCaauGCgACCGaCGCaaaGUCGAu -3' miRNA: 3'- uAUGCaCCGCG---CG-UGGC-GCGg--CAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 27918 | 0.66 | 0.373585 |
Target: 5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3' miRNA: 3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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