miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 27225 0.66 0.408823
Target:  5'- cGUGCGccuccugccacUGGCGCaGCGCCGuUGCgacgcucgCGUCGAa -3'
miRNA:   3'- -UAUGC-----------ACCGCG-CGUGGC-GCG--------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 27918 0.66 0.373585
Target:  5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3'
miRNA:   3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 28219 0.66 0.365104
Target:  5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3'
miRNA:   3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5'
24292 3' -60.8 NC_005263.2 + 35519 0.66 0.365104
Target:  5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3'
miRNA:   3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5'
24292 3' -60.8 NC_005263.2 + 1112 0.66 0.365104
Target:  5'- uUGCaGUcGCGCGCGaaguCCGCGCCGUg-- -3'
miRNA:   3'- uAUG-CAcCGCGCGU----GGCGCGGCAgcu -5'
24292 3' -60.8 NC_005263.2 + 14056 0.66 0.371878
Target:  5'- -cGCGUcGaGCgcauugaGCGCGCCGCGCCGgcccaugUCGGc -3'
miRNA:   3'- uaUGCA-C-CG-------CGCGUGGCGCGGC-------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 5143 0.66 0.373585
Target:  5'- -cACG-GGCGaacCGC-CCGUGuuGUCGAg -3'
miRNA:   3'- uaUGCaCCGC---GCGuGGCGCggCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 17807 0.66 0.373585
Target:  5'- -gACGccGGC-CGCGCCcgGCGCUGUCGc -3'
miRNA:   3'- uaUGCa-CCGcGCGUGG--CGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 20733 0.66 0.373585
Target:  5'- -cGCGccGGcCGC-CGCCGCGCCGcUCGc -3'
miRNA:   3'- uaUGCa-CC-GCGcGUGGCGCGGC-AGCu -5'
24292 3' -60.8 NC_005263.2 + 29018 0.66 0.373585
Target:  5'- aGUGCGU--UGCGCACCGCgacGCCGUacUGAc -3'
miRNA:   3'- -UAUGCAccGCGCGUGGCG---CGGCA--GCU- -5'
24292 3' -60.8 NC_005263.2 + 32756 0.66 0.3822
Target:  5'- uUGCGcGGCGCaauGCgACCGaCGCaaaGUCGAu -3'
miRNA:   3'- uAUGCaCCGCG---CG-UGGC-GCGg--CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 32550 0.66 0.3822
Target:  5'- -gGCGUucaGcGCGCGCGuCUGCGCCGagaUUGAu -3'
miRNA:   3'- uaUGCA---C-CGCGCGU-GGCGCGGC---AGCU- -5'
24292 3' -60.8 NC_005263.2 + 24697 0.66 0.408823
Target:  5'- -aACGgcGGCGCGCcgaaCGUGCCGggCGGc -3'
miRNA:   3'- uaUGCa-CCGCGCGug--GCGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 6328 0.66 0.408823
Target:  5'- -----cGGCGCGCGagucgcCCGCGCCGaUCu- -3'
miRNA:   3'- uaugcaCCGCGCGU------GGCGCGGC-AGcu -5'
24292 3' -60.8 NC_005263.2 + 28093 0.66 0.39982
Target:  5'- cGUGUGuUGGCGCgGCcgAUCGCGUCGUUGAc -3'
miRNA:   3'- -UAUGC-ACCGCG-CG--UGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 15773 0.66 0.39982
Target:  5'- -gGCGUGuucaacaaaGUGCGuCGCC-CGUCGUCGAu -3'
miRNA:   3'- uaUGCAC---------CGCGC-GUGGcGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 42944 0.66 0.39982
Target:  5'- -----aGGCGCaaACCGCGCUGcUCGAc -3'
miRNA:   3'- uaugcaCCGCGcgUGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 14398 0.66 0.39982
Target:  5'- cUGCGaaaggugucUGGCGCGUauugccGCCGCGCUG-CGc -3'
miRNA:   3'- uAUGC---------ACCGCGCG------UGGCGCGGCaGCu -5'
24292 3' -60.8 NC_005263.2 + 4198 0.66 0.39982
Target:  5'- -aACGUGaagcaguacGCGCGCGucgaCGgGUCGUCGAg -3'
miRNA:   3'- uaUGCAC---------CGCGCGUg---GCgCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 5472 0.66 0.390945
Target:  5'- -cACGUcGGCGCuGCuuCGUGCUGcUCGAc -3'
miRNA:   3'- uaUGCA-CCGCG-CGugGCGCGGC-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.