Results 41 - 60 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 40879 | 0.67 | 0.348543 |
Target: 5'- -cGCGUGcacCGCAUgGCGCCGUCGc -3' miRNA: 3'- uaUGCACcgcGCGUGgCGCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 15187 | 0.67 | 0.348543 |
Target: 5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3' miRNA: 3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 17620 | 0.67 | 0.348543 |
Target: 5'- ---aGUGGCGCGggUCGCGCa-UCGAu -3' miRNA: 3'- uaugCACCGCGCguGGCGCGgcAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 38685 | 0.67 | 0.332526 |
Target: 5'- gGUGCGcGGCuaacaGCGCCGCaGCCG-CGAu -3' miRNA: 3'- -UAUGCaCCGcg---CGUGGCG-CGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 29769 | 0.67 | 0.332526 |
Target: 5'- cUGCG-GGUucaGCAgCGUGCCGUCGGc -3' miRNA: 3'- uAUGCaCCGcg-CGUgGCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 34819 | 0.67 | 0.324722 |
Target: 5'- -aAC-UGGCuGCGCA-CGCGCCaGUCGGu -3' miRNA: 3'- uaUGcACCG-CGCGUgGCGCGG-CAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 3332 | 0.67 | 0.323949 |
Target: 5'- -aACGUcuGCGCGCcgccggcGCCGCGCgCgGUCGAg -3' miRNA: 3'- uaUGCAc-CGCGCG-------UGGCGCG-G-CAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 3304 | 0.67 | 0.340466 |
Target: 5'- --uUGUGcGCGCgGCGgCGCGCgGUUGAa -3' miRNA: 3'- uauGCAC-CGCG-CGUgGCGCGgCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 9974 | 0.67 | 0.339666 |
Target: 5'- cUGCG-GGUGCGCacGCCGUccgguucGCCGUCu- -3' miRNA: 3'- uAUGCaCCGCGCG--UGGCG-------CGGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 13908 | 0.67 | 0.332526 |
Target: 5'- -gACGUGacgaacgacaGCGCGUccauGCuCGUGCCGUUGAa -3' miRNA: 3'- uaUGCAC----------CGCGCG----UG-GCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 19749 | 0.67 | 0.340466 |
Target: 5'- -gGCGcUGGCGCGCugGCgGCGCuCGUgGc -3' miRNA: 3'- uaUGC-ACCGCGCG--UGgCGCG-GCAgCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 9573 | 0.67 | 0.317055 |
Target: 5'- -aACGUGuccagGCGCugCGUGCCGUCc- -3' miRNA: 3'- uaUGCACcg---CGCGugGCGCGGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 11611 | 0.68 | 0.287758 |
Target: 5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3' miRNA: 3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 21187 | 0.68 | 0.302133 |
Target: 5'- -gACGcGGaCGCGCGCgGCGCgGgCGAg -3' miRNA: 3'- uaUGCaCC-GCGCGUGgCGCGgCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 11473 | 0.68 | 0.294878 |
Target: 5'- -cGCGcUGcCGCGCACUguuaaacuGCGCCGUCGc -3' miRNA: 3'- uaUGC-ACcGCGCGUGG--------CGCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 3244 | 0.68 | 0.30878 |
Target: 5'- -cAgGUaGGCGCGauCGCCGCGCagacaggCGUCGAg -3' miRNA: 3'- uaUgCA-CCGCGC--GUGGCGCG-------GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 23905 | 0.68 | 0.301402 |
Target: 5'- --uCGUGaGCGCGC-CCGCGagcgugaCCGUCGc -3' miRNA: 3'- uauGCAC-CGCGCGuGGCGC-------GGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 42654 | 0.68 | 0.294878 |
Target: 5'- -gACGUGGCaaccgauCGCuACUGCGCCGaCGGa -3' miRNA: 3'- uaUGCACCGc------GCG-UGGCGCGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 37814 | 0.68 | 0.302133 |
Target: 5'- -gACG-GGCGCGCAuCCGgCGCUcauGUCGc -3' miRNA: 3'- uaUGCaCCGCGCGU-GGC-GCGG---CAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4851 | 0.68 | 0.287758 |
Target: 5'- --cCGUacGCGCGCGCCGUGCCGa--- -3' miRNA: 3'- uauGCAc-CGCGCGUGGCGCGGCagcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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