miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 8034 0.69 0.267213
Target:  5'- uUGCGaGGCGUccGCGCCgugGCGCCGcgCGAg -3'
miRNA:   3'- uAUGCaCCGCG--CGUGG---CGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 35548 0.69 0.235628
Target:  5'- -cGCG-GGCGgGCGCUacgGCGCCGcCGGc -3'
miRNA:   3'- uaUGCaCCGCgCGUGG---CGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 6247 0.69 0.235628
Target:  5'- -cGCGgccaGGCGCGguC-GUGCCGUCGGg -3'
miRNA:   3'- uaUGCa---CCGCGCguGgCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16356 0.7 0.223898
Target:  5'- -gACGaaGCGCGCgGCCGCGUCGcUCGGc -3'
miRNA:   3'- uaUGCacCGCGCG-UGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 45467 0.7 0.2297
Target:  5'- gAUACGccGGCaaGCGCgaugaACCGCGCgGUCGGc -3'
miRNA:   3'- -UAUGCa-CCG--CGCG-----UGGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16487 0.7 0.212667
Target:  5'- -----cGGCGCuGCGCCGCgcgGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCG-CGUGGCG---CGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 4659 0.7 0.232056
Target:  5'- -gACGggcaggccGGCGCGCgggucuuucgucaggAUCGUGCCGUCGGc -3'
miRNA:   3'- uaUGCa-------CCGCGCG---------------UGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20190 0.7 0.212667
Target:  5'- -cGCGccgGGCGaCGCGCC--GCCGUCGAg -3'
miRNA:   3'- uaUGCa--CCGC-GCGUGGcgCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 25569 0.71 0.196732
Target:  5'- -gACGUcGGCGUccGCGCCGC-CCGUCa- -3'
miRNA:   3'- uaUGCA-CCGCG--CGUGGCGcGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 20131 0.71 0.178995
Target:  5'- cGUACGcucGCGCGCAgcagcucugggccauCCGCGCCGUCc- -3'
miRNA:   3'- -UAUGCac-CGCGCGU---------------GGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 20980 0.71 0.191656
Target:  5'- -gACGcGGCuGCGCGCCuGCGC-GUCGAc -3'
miRNA:   3'- uaUGCaCCG-CGCGUGG-CGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 37440 0.71 0.177114
Target:  5'- cAUACGUcGGCGCGCGCggucugCGCGgCGUCc- -3'
miRNA:   3'- -UAUGCA-CCGCGCGUG------GCGCgGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 39138 0.71 0.191656
Target:  5'- -aACGUcGGCG-GCACCGUGUCGgCGAc -3'
miRNA:   3'- uaUGCA-CCGCgCGUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 21183 0.71 0.175715
Target:  5'- cGUGCGUGGCGagcuguucCGCAuCCGCGUugcacaaauccuguCGUCGAc -3'
miRNA:   3'- -UAUGCACCGC--------GCGU-GGCGCG--------------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 44996 0.71 0.172489
Target:  5'- --uCGaGGCGCGCAUgGCGCCGUgGc -3'
miRNA:   3'- uauGCaCCGCGCGUGgCGCGGCAgCu -5'
24292 3' -60.8 NC_005263.2 + 23554 0.72 0.14576
Target:  5'- --cCGUGGCGCagccgccgccgcccGCGCCGcCGCCGUUGc -3'
miRNA:   3'- uauGCACCGCG--------------CGUGGC-GCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 4892 0.72 0.16356
Target:  5'- -cAUGUaGCGCGCGCugcgauagCGCGCCGUCGc -3'
miRNA:   3'- uaUGCAcCGCGCGUG--------GCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 36149 0.72 0.146943
Target:  5'- aGUACG-GGCGCGCGCUcgagGCGaaCGUCGAu -3'
miRNA:   3'- -UAUGCaCCGCGCGUGG----CGCg-GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 38381 0.73 0.128341
Target:  5'- cUGCuGUGGCgaacgagcgcaaGCGCGCCGCaGCgGUCGAg -3'
miRNA:   3'- uAUG-CACCG------------CGCGUGGCG-CGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20984 0.73 0.143036
Target:  5'- gGUACGgguucGGUGCaauuCGCCGCGCCcGUCGAa -3'
miRNA:   3'- -UAUGCa----CCGCGc---GUGGCGCGG-CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.