miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 26860 1.06 0.000401
Target:  5'- aAUACGUGGCGCGCACCGCGCCGUCGAu -3'
miRNA:   3'- -UAUGCACCGCGCGUGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 25944 0.77 0.07153
Target:  5'- -gGCGcUGGCGCaaugcgaGCGUCGCGCCGUCGAg -3'
miRNA:   3'- uaUGC-ACCGCG-------CGUGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 10016 0.76 0.08252
Target:  5'- gGUGCG-GGCGCaGCACCGCcGCCGagcugcUCGAg -3'
miRNA:   3'- -UAUGCaCCGCG-CGUGGCG-CGGC------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 20649 0.75 0.092248
Target:  5'- -cGCaGUGGC-CGCGCCGCucgucgcgGCCGUCGAa -3'
miRNA:   3'- uaUG-CACCGcGCGUGGCG--------CGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 27129 0.74 0.108901
Target:  5'- -cGCGcaGGCGCGCAgCCGCGUCGgCGAu -3'
miRNA:   3'- uaUGCa-CCGCGCGU-GGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 13655 0.74 0.115053
Target:  5'- -gACGgucGUGCGCACCGCGUCG-CGAa -3'
miRNA:   3'- uaUGCac-CGCGCGUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 29065 0.74 0.118249
Target:  5'- -cGCGUccucggggcGGCGCGCAUCG-GCCGUCGc -3'
miRNA:   3'- uaUGCA---------CCGCGCGUGGCgCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 6611 0.73 0.128341
Target:  5'- -cGCGUucggcGGCGCGCuCgGCGCgGUCGAg -3'
miRNA:   3'- uaUGCA-----CCGCGCGuGgCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 38381 0.73 0.128341
Target:  5'- cUGCuGUGGCgaacgagcgcaaGCGCGCCGCaGCgGUCGAg -3'
miRNA:   3'- uAUG-CACCG------------CGCGUGGCG-CGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 36216 0.73 0.128341
Target:  5'- -cGCGcaGGCGCccgGCGCCGCGUCGUCa- -3'
miRNA:   3'- uaUGCa-CCGCG---CGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 30714 0.73 0.139224
Target:  5'- -cGCcaGGCGCGCgGCCGCGCCGgcaGAc -3'
miRNA:   3'- uaUGcaCCGCGCG-UGGCGCGGCag-CU- -5'
24292 3' -60.8 NC_005263.2 + 31255 0.73 0.139224
Target:  5'- -cGCGcGGCGCgGCGCCGgGCagGUCGAa -3'
miRNA:   3'- uaUGCaCCGCG-CGUGGCgCGg-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 14434 0.73 0.139224
Target:  5'- cAUGCGacGGCGUGCGCgCGCGCCucuuUCGAg -3'
miRNA:   3'- -UAUGCa-CCGCGCGUG-GCGCGGc---AGCU- -5'
24292 3' -60.8 NC_005263.2 + 20984 0.73 0.143036
Target:  5'- gGUACGgguucGGUGCaauuCGCCGCGCCcGUCGAa -3'
miRNA:   3'- -UAUGCa----CCGCGc---GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 23554 0.72 0.14576
Target:  5'- --cCGUGGCGCagccgccgccgcccGCGCCGcCGCCGUUGc -3'
miRNA:   3'- uauGCACCGCG--------------CGUGGC-GCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 36149 0.72 0.146943
Target:  5'- aGUACG-GGCGCGCGCUcgagGCGaaCGUCGAu -3'
miRNA:   3'- -UAUGCaCCGCGCGUGG----CGCg-GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 4892 0.72 0.16356
Target:  5'- -cAUGUaGCGCGCGCugcgauagCGCGCCGUCGc -3'
miRNA:   3'- uaUGCAcCGCGCGUG--------GCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 44996 0.71 0.172489
Target:  5'- --uCGaGGCGCGCAUgGCGCCGUgGc -3'
miRNA:   3'- uauGCaCCGCGCGUGgCGCGGCAgCu -5'
24292 3' -60.8 NC_005263.2 + 21183 0.71 0.175715
Target:  5'- cGUGCGUGGCGagcuguucCGCAuCCGCGUugcacaaauccuguCGUCGAc -3'
miRNA:   3'- -UAUGCACCGC--------GCGU-GGCGCG--------------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 37440 0.71 0.177114
Target:  5'- cAUACGUcGGCGCGCGCggucugCGCGgCGUCc- -3'
miRNA:   3'- -UAUGCA-CCGCGCGUG------GCGCgGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.