miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 12109 0.67 0.316296
Target:  5'- cAUGCGcagcGGCGCGCGCgccauuacgCGCGCUccaggcgGUCGAg -3'
miRNA:   3'- -UAUGCa---CCGCGCGUG---------GCGCGG-------CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 24202 0.67 0.317055
Target:  5'- -aGCGaUGcGCGCGaccugguuCAgCGCGCCGUUGAa -3'
miRNA:   3'- uaUGC-AC-CGCGC--------GUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 9573 0.67 0.317055
Target:  5'- -aACGUGuccagGCGCugCGUGCCGUCc- -3'
miRNA:   3'- uaUGCACcg---CGCGugGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 40874 0.67 0.317055
Target:  5'- -aACGUcgaagaGGCGCGCGCCuucugguCGCCGgCGAu -3'
miRNA:   3'- uaUGCA------CCGCGCGUGGc------GCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 3332 0.67 0.323949
Target:  5'- -aACGUcuGCGCGCcgccggcGCCGCGCgCgGUCGAg -3'
miRNA:   3'- uaUGCAc-CGCGCG-------UGGCGCG-G-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 1634 0.67 0.323949
Target:  5'- -cGCGUcgucggcGGCGUagcccuggauGCGCUGCGCgGUCGGa -3'
miRNA:   3'- uaUGCA-------CCGCG----------CGUGGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 34819 0.67 0.324722
Target:  5'- -aAC-UGGCuGCGCA-CGCGCCaGUCGGu -3'
miRNA:   3'- uaUGcACCG-CGCGUgGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 29769 0.67 0.332526
Target:  5'- cUGCG-GGUucaGCAgCGUGCCGUCGGc -3'
miRNA:   3'- uAUGCaCCGcg-CGUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 13908 0.67 0.332526
Target:  5'- -gACGUGacgaacgacaGCGCGUccauGCuCGUGCCGUUGAa -3'
miRNA:   3'- uaUGCAC----------CGCGCG----UG-GCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 38685 0.67 0.332526
Target:  5'- gGUGCGcGGCuaacaGCGCCGCaGCCG-CGAu -3'
miRNA:   3'- -UAUGCaCCGcg---CGUGGCG-CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 9974 0.67 0.339666
Target:  5'- cUGCG-GGUGCGCacGCCGUccgguucGCCGUCu- -3'
miRNA:   3'- uAUGCaCCGCGCG--UGGCG-------CGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 9623 0.67 0.340466
Target:  5'- cUGCGUGaGCGCcucGCGguaaaucuggcUUGCGCUGUCGAg -3'
miRNA:   3'- uAUGCAC-CGCG---CGU-----------GGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3304 0.67 0.340466
Target:  5'- --uUGUGcGCGCgGCGgCGCGCgGUUGAa -3'
miRNA:   3'- uauGCAC-CGCG-CGUgGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 19749 0.67 0.340466
Target:  5'- -gGCGcUGGCGCGCugGCgGCGCuCGUgGc -3'
miRNA:   3'- uaUGC-ACCGCGCG--UGgCGCG-GCAgCu -5'
24292 3' -60.8 NC_005263.2 + 17620 0.67 0.348543
Target:  5'- ---aGUGGCGCGggUCGCGCa-UCGAu -3'
miRNA:   3'- uaugCACCGCGCguGGCGCGgcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 15187 0.67 0.348543
Target:  5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3'
miRNA:   3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 40879 0.67 0.348543
Target:  5'- -cGCGUGcacCGCAUgGCGCCGUCGc -3'
miRNA:   3'- uaUGCACcgcGCGUGgCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 35992 0.67 0.348543
Target:  5'- -cGCGUaauGGCGCGCgcGCCGCugcgcaugccagGCCG-CGAc -3'
miRNA:   3'- uaUGCA---CCGCGCG--UGGCG------------CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 5788 0.67 0.348543
Target:  5'- -cGCGcacGCGC-CGCUGCGCCGUCu- -3'
miRNA:   3'- uaUGCac-CGCGcGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 6055 0.67 0.348543
Target:  5'- cGUugGcGGCGCGCuucACgCGCGCCGa--- -3'
miRNA:   3'- -UAugCaCCGCGCG---UG-GCGCGGCagcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.