Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 15187 | 0.67 | 0.348543 |
Target: 5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3' miRNA: 3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 28107 | 0.67 | 0.356756 |
Target: 5'- -gACGUGuCGaucgcaaGUGCCGCGCCGgggCGAa -3' miRNA: 3'- uaUGCACcGCg------CGUGGCGCGGCa--GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 46817 | 0.67 | 0.356756 |
Target: 5'- -aACGUGaGCGCGaucuuUCGCGCCGcucCGAc -3' miRNA: 3'- uaUGCAC-CGCGCgu---GGCGCGGCa--GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 47473 | 0.67 | 0.356756 |
Target: 5'- -cACG-GGCGUcacuggcaGCACCGgccCGCUGUCGGg -3' miRNA: 3'- uaUGCaCCGCG--------CGUGGC---GCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 28219 | 0.66 | 0.365104 |
Target: 5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3' miRNA: 3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 1112 | 0.66 | 0.365104 |
Target: 5'- uUGCaGUcGCGCGCGaaguCCGCGCCGUg-- -3' miRNA: 3'- uAUG-CAcCGCGCGU----GGCGCGGCAgcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 35519 | 0.66 | 0.365104 |
Target: 5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3' miRNA: 3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 14056 | 0.66 | 0.371878 |
Target: 5'- -cGCGUcGaGCgcauugaGCGCGCCGCGCCGgcccaugUCGGc -3' miRNA: 3'- uaUGCA-C-CG-------CGCGUGGCGCGGC-------AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 17807 | 0.66 | 0.373585 |
Target: 5'- -gACGccGGC-CGCGCCcgGCGCUGUCGc -3' miRNA: 3'- uaUGCa-CCGcGCGUGG--CGCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 27918 | 0.66 | 0.373585 |
Target: 5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3' miRNA: 3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 20733 | 0.66 | 0.373585 |
Target: 5'- -cGCGccGGcCGC-CGCCGCGCCGcUCGc -3' miRNA: 3'- uaUGCa-CC-GCGcGUGGCGCGGC-AGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 5143 | 0.66 | 0.373585 |
Target: 5'- -cACG-GGCGaacCGC-CCGUGuuGUCGAg -3' miRNA: 3'- uaUGCaCCGC---GCGuGGCGCggCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 29018 | 0.66 | 0.373585 |
Target: 5'- aGUGCGU--UGCGCACCGCgacGCCGUacUGAc -3' miRNA: 3'- -UAUGCAccGCGCGUGGCG---CGGCA--GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 32756 | 0.66 | 0.3822 |
Target: 5'- uUGCGcGGCGCaauGCgACCGaCGCaaaGUCGAu -3' miRNA: 3'- uAUGCaCCGCG---CG-UGGC-GCGg--CAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 32550 | 0.66 | 0.3822 |
Target: 5'- -gGCGUucaGcGCGCGCGuCUGCGCCGagaUUGAu -3' miRNA: 3'- uaUGCA---C-CGCGCGU-GGCGCGGC---AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 5472 | 0.66 | 0.390945 |
Target: 5'- -cACGUcGGCGCuGCuuCGUGCUGcUCGAc -3' miRNA: 3'- uaUGCA-CCGCG-CGugGCGCGGC-AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 47281 | 0.66 | 0.390945 |
Target: 5'- ---aGUGacGUGCGCGCCGaagcgcagucCGCUGUCGAc -3' miRNA: 3'- uaugCAC--CGCGCGUGGC----------GCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 33160 | 0.66 | 0.390945 |
Target: 5'- -aGCGcGGCGCcuuGCAUCGCGacggggaUGUCGAg -3' miRNA: 3'- uaUGCaCCGCG---CGUGGCGCg------GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 12342 | 0.66 | 0.390945 |
Target: 5'- -gGCGUGGCcgguuuccucaaGCGUcucgcGCCGCGCCG-Cu- -3' miRNA: 3'- uaUGCACCG------------CGCG-----UGGCGCGGCaGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 31622 | 0.66 | 0.390945 |
Target: 5'- -gACGgccGCGCgGCGCaGCGCCGUCu- -3' miRNA: 3'- uaUGCac-CGCG-CGUGgCGCGGCAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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