miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 29018 0.66 0.373585
Target:  5'- aGUGCGU--UGCGCACCGCgacGCCGUacUGAc -3'
miRNA:   3'- -UAUGCAccGCGCGUGGCG---CGGCA--GCU- -5'
24292 3' -60.8 NC_005263.2 + 27918 0.66 0.373585
Target:  5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3'
miRNA:   3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 5143 0.66 0.373585
Target:  5'- -cACG-GGCGaacCGC-CCGUGuuGUCGAg -3'
miRNA:   3'- uaUGCaCCGC---GCGuGGCGCggCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20733 0.66 0.373585
Target:  5'- -cGCGccGGcCGC-CGCCGCGCCGcUCGc -3'
miRNA:   3'- uaUGCa-CC-GCGcGUGGCGCGGC-AGCu -5'
24292 3' -60.8 NC_005263.2 + 14056 0.66 0.371878
Target:  5'- -cGCGUcGaGCgcauugaGCGCGCCGCGCCGgcccaugUCGGc -3'
miRNA:   3'- uaUGCA-C-CG-------CGCGUGGCGCGGC-------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 28219 0.66 0.365104
Target:  5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3'
miRNA:   3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5'
24292 3' -60.8 NC_005263.2 + 1112 0.66 0.365104
Target:  5'- uUGCaGUcGCGCGCGaaguCCGCGCCGUg-- -3'
miRNA:   3'- uAUG-CAcCGCGCGU----GGCGCGGCAgcu -5'
24292 3' -60.8 NC_005263.2 + 35519 0.66 0.365104
Target:  5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3'
miRNA:   3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5'
24292 3' -60.8 NC_005263.2 + 28107 0.67 0.356756
Target:  5'- -gACGUGuCGaucgcaaGUGCCGCGCCGgggCGAa -3'
miRNA:   3'- uaUGCACcGCg------CGUGGCGCGGCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 46817 0.67 0.356756
Target:  5'- -aACGUGaGCGCGaucuuUCGCGCCGcucCGAc -3'
miRNA:   3'- uaUGCAC-CGCGCgu---GGCGCGGCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 47473 0.67 0.356756
Target:  5'- -cACG-GGCGUcacuggcaGCACCGgccCGCUGUCGGg -3'
miRNA:   3'- uaUGCaCCGCG--------CGUGGC---GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 5788 0.67 0.348543
Target:  5'- -cGCGcacGCGC-CGCUGCGCCGUCu- -3'
miRNA:   3'- uaUGCac-CGCGcGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 6055 0.67 0.348543
Target:  5'- cGUugGcGGCGCGCuucACgCGCGCCGa--- -3'
miRNA:   3'- -UAugCaCCGCGCG---UG-GCGCGGCagcu -5'
24292 3' -60.8 NC_005263.2 + 35992 0.67 0.348543
Target:  5'- -cGCGUaauGGCGCGCgcGCCGCugcgcaugccagGCCG-CGAc -3'
miRNA:   3'- uaUGCA---CCGCGCG--UGGCG------------CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 40879 0.67 0.348543
Target:  5'- -cGCGUGcacCGCAUgGCGCCGUCGc -3'
miRNA:   3'- uaUGCACcgcGCGUGgCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 15187 0.67 0.348543
Target:  5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3'
miRNA:   3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 29172 0.67 0.348543
Target:  5'- -----cGGCGCGCucgagcgcucguGCCGCGCgGUCa- -3'
miRNA:   3'- uaugcaCCGCGCG------------UGGCGCGgCAGcu -5'
24292 3' -60.8 NC_005263.2 + 17620 0.67 0.348543
Target:  5'- ---aGUGGCGCGggUCGCGCa-UCGAu -3'
miRNA:   3'- uaugCACCGCGCguGGCGCGgcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3304 0.67 0.340466
Target:  5'- --uUGUGcGCGCgGCGgCGCGCgGUUGAa -3'
miRNA:   3'- uauGCAC-CGCG-CGUgGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 9623 0.67 0.340466
Target:  5'- cUGCGUGaGCGCcucGCGguaaaucuggcUUGCGCUGUCGAg -3'
miRNA:   3'- uAUGCAC-CGCG---CGU-----------GGCGCGGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.