miRNA display CGI


Results 61 - 80 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 23905 0.68 0.301402
Target:  5'- --uCGUGaGCGCGC-CCGCGagcgugaCCGUCGc -3'
miRNA:   3'- uauGCAC-CGCGCGuGGCGC-------GGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 11473 0.68 0.294878
Target:  5'- -cGCGcUGcCGCGCACUguuaaacuGCGCCGUCGc -3'
miRNA:   3'- uaUGC-ACcGCGCGUGG--------CGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 42654 0.68 0.294878
Target:  5'- -gACGUGGCaaccgauCGCuACUGCGCCGaCGGa -3'
miRNA:   3'- uaUGCACCGc------GCG-UGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 34079 0.68 0.294878
Target:  5'- --cCGUGGC-CGaACCGuCGCCGUCGc -3'
miRNA:   3'- uauGCACCGcGCgUGGC-GCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 11611 0.68 0.287758
Target:  5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3'
miRNA:   3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 4851 0.68 0.287758
Target:  5'- --cCGUacGCGCGCGCCGUGCCGa--- -3'
miRNA:   3'- uauGCAc-CGCGCGUGGCGCGGCagcu -5'
24292 3' -60.8 NC_005263.2 + 39717 0.68 0.273927
Target:  5'- -aAUGgccGGCGCGgGCCGCGUCGaccuggCGAg -3'
miRNA:   3'- uaUGCa--CCGCGCgUGGCGCGGCa-----GCU- -5'
24292 3' -60.8 NC_005263.2 + 8737 0.69 0.267213
Target:  5'- gGUGCGUcGUagaaGCGCGCCGCcGCCGagCGAa -3'
miRNA:   3'- -UAUGCAcCG----CGCGUGGCG-CGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 8034 0.69 0.267213
Target:  5'- uUGCGaGGCGUccGCGCCgugGCGCCGcgCGAg -3'
miRNA:   3'- uAUGCaCCGCG--CGUGG---CGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 48059 0.69 0.266549
Target:  5'- gGUACGaaGGCGCGCccgaccuGCCGCGCCagUGAc -3'
miRNA:   3'- -UAUGCa-CCGCGCG-------UGGCGCGGcaGCU- -5'
24292 3' -60.8 NC_005263.2 + 41162 0.69 0.260633
Target:  5'- -cGCGcGGCGUGgGCgGcCGUCGUCGAu -3'
miRNA:   3'- uaUGCaCCGCGCgUGgC-GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 33573 0.69 0.256749
Target:  5'- -cGCGUcuacaucgaaaaagcGGCGaacgGCGCCGCGCUGaUCGAu -3'
miRNA:   3'- uaUGCA---------------CCGCg---CGUGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 3174 0.69 0.254186
Target:  5'- --uCGUGGCGCggaauaacugccGCugCGCGUCGgCGAg -3'
miRNA:   3'- uauGCACCGCG------------CGugGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 1418 0.69 0.254186
Target:  5'- --uCGUcGGCGCGCGCCGCcuugGCUGcgcgCGAg -3'
miRNA:   3'- uauGCA-CCGCGCGUGGCG----CGGCa---GCU- -5'
24292 3' -60.8 NC_005263.2 + 33673 0.69 0.254186
Target:  5'- -----aGGCGCGCGCgCaCGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCGCGUG-GcGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 38350 0.69 0.254186
Target:  5'- gAUGCGaagucGGUGCGCACCGCGa--UCGAc -3'
miRNA:   3'- -UAUGCa----CCGCGCGUGGCGCggcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 32379 0.69 0.24787
Target:  5'- -gAUG-GGCGCuaaCGCCGCGCUgGUCGAa -3'
miRNA:   3'- uaUGCaCCGCGc--GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 18868 0.69 0.247245
Target:  5'- -cGCGUGccucggcGCGcCGCugCGCGCCGaCGGc -3'
miRNA:   3'- uaUGCAC-------CGC-GCGugGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 18331 0.69 0.238035
Target:  5'- -gACGUaacGGUGCGCAacaagugagccgcuuCCGCaCCGUCGAa -3'
miRNA:   3'- uaUGCA---CCGCGCGU---------------GGCGcGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 35548 0.69 0.235628
Target:  5'- -cGCG-GGCGgGCGCUacgGCGCCGcCGGc -3'
miRNA:   3'- uaUGCaCCGCgCGUGG---CGCGGCaGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.