miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 1112 0.66 0.365104
Target:  5'- uUGCaGUcGCGCGCGaaguCCGCGCCGUg-- -3'
miRNA:   3'- uAUG-CAcCGCGCGU----GGCGCGGCAgcu -5'
24292 3' -60.8 NC_005263.2 + 1283 0.66 0.408823
Target:  5'- -cGCcUGGCGCGCGuuGCGUuaCG-CGAu -3'
miRNA:   3'- uaUGcACCGCGCGUggCGCG--GCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 1418 0.69 0.254186
Target:  5'- --uCGUcGGCGCGCGCCGCcuugGCUGcgcgCGAg -3'
miRNA:   3'- uauGCA-CCGCGCGUGGCG----CGGCa---GCU- -5'
24292 3' -60.8 NC_005263.2 + 1634 0.67 0.323949
Target:  5'- -cGCGUcgucggcGGCGUagcccuggauGCGCUGCGCgGUCGGa -3'
miRNA:   3'- uaUGCA-------CCGCG----------CGUGGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 2253 0.66 0.39982
Target:  5'- uGUACGUGuaguuguucgaGCGCaGCGCguuCGCCGUCGGc -3'
miRNA:   3'- -UAUGCAC-----------CGCG-CGUGgc-GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3174 0.69 0.254186
Target:  5'- --uCGUGGCGCggaauaacugccGCugCGCGUCGgCGAg -3'
miRNA:   3'- uauGCACCGCG------------CGugGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 3244 0.68 0.30878
Target:  5'- -cAgGUaGGCGCGauCGCCGCGCagacaggCGUCGAg -3'
miRNA:   3'- uaUgCA-CCGCGC--GUGGCGCG-------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3304 0.67 0.340466
Target:  5'- --uUGUGcGCGCgGCGgCGCGCgGUUGAa -3'
miRNA:   3'- uauGCAC-CGCG-CGUgGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 3332 0.67 0.323949
Target:  5'- -aACGUcuGCGCGCcgccggcGCCGCGCgCgGUCGAg -3'
miRNA:   3'- uaUGCAc-CGCGCG-------UGGCGCG-G-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 4198 0.66 0.39982
Target:  5'- -aACGUGaagcaguacGCGCGCGucgaCGgGUCGUCGAg -3'
miRNA:   3'- uaUGCAC---------CGCGCGUg---GCgCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 4659 0.7 0.232056
Target:  5'- -gACGggcaggccGGCGCGCgggucuuucgucaggAUCGUGCCGUCGGc -3'
miRNA:   3'- uaUGCa-------CCGCGCG---------------UGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 4851 0.68 0.287758
Target:  5'- --cCGUacGCGCGCGCCGUGCCGa--- -3'
miRNA:   3'- uauGCAc-CGCGCGUGGCGCGGCagcu -5'
24292 3' -60.8 NC_005263.2 + 4892 0.72 0.16356
Target:  5'- -cAUGUaGCGCGCGCugcgauagCGCGCCGUCGc -3'
miRNA:   3'- uaUGCAcCGCGCGUG--------GCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 5143 0.66 0.373585
Target:  5'- -cACG-GGCGaacCGC-CCGUGuuGUCGAg -3'
miRNA:   3'- uaUGCaCCGC---GCGuGGCGCggCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 5472 0.66 0.390945
Target:  5'- -cACGUcGGCGCuGCuuCGUGCUGcUCGAc -3'
miRNA:   3'- uaUGCA-CCGCG-CGugGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 5788 0.67 0.348543
Target:  5'- -cGCGcacGCGC-CGCUGCGCCGUCu- -3'
miRNA:   3'- uaUGCac-CGCGcGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 6055 0.67 0.348543
Target:  5'- cGUugGcGGCGCGCuucACgCGCGCCGa--- -3'
miRNA:   3'- -UAugCaCCGCGCG---UG-GCGCGGCagcu -5'
24292 3' -60.8 NC_005263.2 + 6247 0.69 0.235628
Target:  5'- -cGCGgccaGGCGCGguC-GUGCCGUCGGg -3'
miRNA:   3'- uaUGCa---CCGCGCguGgCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 6328 0.66 0.408823
Target:  5'- -----cGGCGCGCGagucgcCCGCGCCGaUCu- -3'
miRNA:   3'- uaugcaCCGCGCGU------GGCGCGGC-AGcu -5'
24292 3' -60.8 NC_005263.2 + 6611 0.73 0.128341
Target:  5'- -cGCGUucggcGGCGCGCuCgGCGCgGUCGAg -3'
miRNA:   3'- uaUGCA-----CCGCGCGuGgCGCGgCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.