miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 8034 0.69 0.267213
Target:  5'- uUGCGaGGCGUccGCGCCgugGCGCCGcgCGAg -3'
miRNA:   3'- uAUGCaCCGCG--CGUGG---CGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 8189 0.68 0.302133
Target:  5'- cUGCGUuuucgguugcGGCaCGUACgGCGCCGUCa- -3'
miRNA:   3'- uAUGCA----------CCGcGCGUGgCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 8737 0.69 0.267213
Target:  5'- gGUGCGUcGUagaaGCGCGCCGCcGCCGagCGAa -3'
miRNA:   3'- -UAUGCAcCG----CGCGUGGCG-CGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 9573 0.67 0.317055
Target:  5'- -aACGUGuccagGCGCugCGUGCCGUCc- -3'
miRNA:   3'- uaUGCACcg---CGCGugGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 9623 0.67 0.340466
Target:  5'- cUGCGUGaGCGCcucGCGguaaaucuggcUUGCGCUGUCGAg -3'
miRNA:   3'- uAUGCAC-CGCG---CGU-----------GGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 9974 0.67 0.339666
Target:  5'- cUGCG-GGUGCGCacGCCGUccgguucGCCGUCu- -3'
miRNA:   3'- uAUGCaCCGCGCG--UGGCG-------CGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 10016 0.76 0.08252
Target:  5'- gGUGCG-GGCGCaGCACCGCcGCCGagcugcUCGAg -3'
miRNA:   3'- -UAUGCaCCGCG-CGUGGCG-CGGC------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 11473 0.68 0.294878
Target:  5'- -cGCGcUGcCGCGCACUguuaaacuGCGCCGUCGc -3'
miRNA:   3'- uaUGC-ACcGCGCGUGG--------CGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 11611 0.68 0.287758
Target:  5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3'
miRNA:   3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 12109 0.67 0.316296
Target:  5'- cAUGCGcagcGGCGCGCGCgccauuacgCGCGCUccaggcgGUCGAg -3'
miRNA:   3'- -UAUGCa---CCGCGCGUG---------GCGCGG-------CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 12342 0.66 0.390945
Target:  5'- -gGCGUGGCcgguuuccucaaGCGUcucgcGCCGCGCCG-Cu- -3'
miRNA:   3'- uaUGCACCG------------CGCG-----UGGCGCGGCaGcu -5'
24292 3' -60.8 NC_005263.2 + 13655 0.74 0.115053
Target:  5'- -gACGgucGUGCGCACCGCGUCG-CGAa -3'
miRNA:   3'- uaUGCac-CGCGCGUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 13908 0.67 0.332526
Target:  5'- -gACGUGacgaacgacaGCGCGUccauGCuCGUGCCGUUGAa -3'
miRNA:   3'- uaUGCAC----------CGCGCG----UG-GCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 14056 0.66 0.371878
Target:  5'- -cGCGUcGaGCgcauugaGCGCGCCGCGCCGgcccaugUCGGc -3'
miRNA:   3'- uaUGCA-C-CG-------CGCGUGGCGCGGC-------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 14398 0.66 0.39982
Target:  5'- cUGCGaaaggugucUGGCGCGUauugccGCCGCGCUG-CGc -3'
miRNA:   3'- uAUGC---------ACCGCGCG------UGGCGCGGCaGCu -5'
24292 3' -60.8 NC_005263.2 + 14434 0.73 0.139224
Target:  5'- cAUGCGacGGCGUGCGCgCGCGCCucuuUCGAg -3'
miRNA:   3'- -UAUGCa-CCGCGCGUG-GCGCGGc---AGCU- -5'
24292 3' -60.8 NC_005263.2 + 15187 0.67 0.348543
Target:  5'- -gACGcga-GCGCGCCGCGCgaCGUCGGc -3'
miRNA:   3'- uaUGCaccgCGCGUGGCGCG--GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 15773 0.66 0.39982
Target:  5'- -gGCGUGuucaacaaaGUGCGuCGCC-CGUCGUCGAu -3'
miRNA:   3'- uaUGCAC---------CGCGC-GUGGcGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 16356 0.7 0.223898
Target:  5'- -gACGaaGCGCGCgGCCGCGUCGcUCGGc -3'
miRNA:   3'- uaUGCacCGCGCG-UGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 16487 0.7 0.212667
Target:  5'- -----cGGCGCuGCGCCGCgcgGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCG-CGUGGCG---CGGCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.