miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 16855 0.68 0.302133
Target:  5'- cUGCccGGCGcCGCGCCGCGCgGaacCGAa -3'
miRNA:   3'- uAUGcaCCGC-GCGUGGCGCGgCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 17620 0.67 0.348543
Target:  5'- ---aGUGGCGCGggUCGCGCa-UCGAu -3'
miRNA:   3'- uaugCACCGCGCguGGCGCGgcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 17807 0.66 0.373585
Target:  5'- -gACGccGGC-CGCGCCcgGCGCUGUCGc -3'
miRNA:   3'- uaUGCa-CCGcGCGUGG--CGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 18331 0.69 0.238035
Target:  5'- -gACGUaacGGUGCGCAacaagugagccgcuuCCGCaCCGUCGAa -3'
miRNA:   3'- uaUGCA---CCGCGCGU---------------GGCGcGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 18868 0.69 0.247245
Target:  5'- -cGCGUGccucggcGCGcCGCugCGCGCCGaCGGc -3'
miRNA:   3'- uaUGCAC-------CGC-GCGugGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 19749 0.67 0.340466
Target:  5'- -gGCGcUGGCGCGCugGCgGCGCuCGUgGc -3'
miRNA:   3'- uaUGC-ACCGCGCG--UGgCGCG-GCAgCu -5'
24292 3' -60.8 NC_005263.2 + 20131 0.71 0.178995
Target:  5'- cGUACGcucGCGCGCAgcagcucugggccauCCGCGCCGUCc- -3'
miRNA:   3'- -UAUGCac-CGCGCGU---------------GGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 20190 0.7 0.212667
Target:  5'- -cGCGccgGGCGaCGCGCC--GCCGUCGAg -3'
miRNA:   3'- uaUGCa--CCGC-GCGUGGcgCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20649 0.75 0.092248
Target:  5'- -cGCaGUGGC-CGCGCCGCucgucgcgGCCGUCGAa -3'
miRNA:   3'- uaUG-CACCGcGCGUGGCG--------CGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20733 0.66 0.373585
Target:  5'- -cGCGccGGcCGC-CGCCGCGCCGcUCGc -3'
miRNA:   3'- uaUGCa-CC-GCGcGUGGCGCGGC-AGCu -5'
24292 3' -60.8 NC_005263.2 + 20980 0.71 0.191656
Target:  5'- -gACGcGGCuGCGCGCCuGCGC-GUCGAc -3'
miRNA:   3'- uaUGCaCCG-CGCGUGG-CGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 20984 0.73 0.143036
Target:  5'- gGUACGgguucGGUGCaauuCGCCGCGCCcGUCGAa -3'
miRNA:   3'- -UAUGCa----CCGCGc---GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 21183 0.71 0.175715
Target:  5'- cGUGCGUGGCGagcuguucCGCAuCCGCGUugcacaaauccuguCGUCGAc -3'
miRNA:   3'- -UAUGCACCGC--------GCGU-GGCGCG--------------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 21187 0.68 0.302133
Target:  5'- -gACGcGGaCGCGCGCgGCGCgGgCGAg -3'
miRNA:   3'- uaUGCaCC-GCGCGUGgCGCGgCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 23554 0.72 0.14576
Target:  5'- --cCGUGGCGCagccgccgccgcccGCGCCGcCGCCGUUGc -3'
miRNA:   3'- uauGCACCGCG--------------CGUGGC-GCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 23905 0.68 0.301402
Target:  5'- --uCGUGaGCGCGC-CCGCGagcgugaCCGUCGc -3'
miRNA:   3'- uauGCAC-CGCGCGuGGCGC-------GGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 24142 0.66 0.39982
Target:  5'- uUGCGUcgcGGuUGCGaa-CGCGCUGUCGAa -3'
miRNA:   3'- uAUGCA---CC-GCGCgugGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 24202 0.67 0.317055
Target:  5'- -aGCGaUGcGCGCGaccugguuCAgCGCGCCGUUGAa -3'
miRNA:   3'- uaUGC-AC-CGCGC--------GUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 24697 0.66 0.408823
Target:  5'- -aACGgcGGCGCGCcgaaCGUGCCGggCGGc -3'
miRNA:   3'- uaUGCa-CCGCGCGug--GCGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 25569 0.71 0.196732
Target:  5'- -gACGUcGGCGUccGCGCCGC-CCGUCa- -3'
miRNA:   3'- uaUGCA-CCGCG--CGUGGCGcGGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.