Results 61 - 80 of 112 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 25944 | 0.77 | 0.07153 |
Target: 5'- -gGCGcUGGCGCaaugcgaGCGUCGCGCCGUCGAg -3' miRNA: 3'- uaUGC-ACCGCG-------CGUGGCGCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 26860 | 1.06 | 0.000401 |
Target: 5'- aAUACGUGGCGCGCACCGCGCCGUCGAu -3' miRNA: 3'- -UAUGCACCGCGCGUGGCGCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 27129 | 0.74 | 0.108901 |
Target: 5'- -cGCGcaGGCGCGCAgCCGCGUCGgCGAu -3' miRNA: 3'- uaUGCa-CCGCGCGU-GGCGCGGCaGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 27225 | 0.66 | 0.408823 |
Target: 5'- cGUGCGccuccugccacUGGCGCaGCGCCGuUGCgacgcucgCGUCGAa -3' miRNA: 3'- -UAUGC-----------ACCGCG-CGUGGC-GCG--------GCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 27233 | 0.66 | 0.408823 |
Target: 5'- --uCGUGaGCGUG-AUCGCGCCGcCGGc -3' miRNA: 3'- uauGCAC-CGCGCgUGGCGCGGCaGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 27918 | 0.66 | 0.373585 |
Target: 5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3' miRNA: 3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 28093 | 0.66 | 0.39982 |
Target: 5'- cGUGUGuUGGCGCgGCcgAUCGCGUCGUUGAc -3' miRNA: 3'- -UAUGC-ACCGCG-CG--UGGCGCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 28107 | 0.67 | 0.356756 |
Target: 5'- -gACGUGuCGaucgcaaGUGCCGCGCCGgggCGAa -3' miRNA: 3'- uaUGCACcGCg------CGUGGCGCGGCa--GCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 28219 | 0.66 | 0.365104 |
Target: 5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3' miRNA: 3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 29018 | 0.66 | 0.373585 |
Target: 5'- aGUGCGU--UGCGCACCGCgacGCCGUacUGAc -3' miRNA: 3'- -UAUGCAccGCGCGUGGCG---CGGCA--GCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 29065 | 0.74 | 0.118249 |
Target: 5'- -cGCGUccucggggcGGCGCGCAUCG-GCCGUCGc -3' miRNA: 3'- uaUGCA---------CCGCGCGUGGCgCGGCAGCu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 29172 | 0.67 | 0.348543 |
Target: 5'- -----cGGCGCGCucgagcgcucguGCCGCGCgGUCa- -3' miRNA: 3'- uaugcaCCGCGCG------------UGGCGCGgCAGcu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 29763 | 0.68 | 0.302133 |
Target: 5'- gGUGCGgaagcGGCucacuuguuGCGCACCGUuaCGUCGGc -3' miRNA: 3'- -UAUGCa----CCG---------CGCGUGGCGcgGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 29769 | 0.67 | 0.332526 |
Target: 5'- cUGCG-GGUucaGCAgCGUGCCGUCGGc -3' miRNA: 3'- uAUGCaCCGcg-CGUgGCGCGGCAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 30714 | 0.73 | 0.139224 |
Target: 5'- -cGCcaGGCGCGCgGCCGCGCCGgcaGAc -3' miRNA: 3'- uaUGcaCCGCGCG-UGGCGCGGCag-CU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 31255 | 0.73 | 0.139224 |
Target: 5'- -cGCGcGGCGCgGCGCCGgGCagGUCGAa -3' miRNA: 3'- uaUGCaCCGCG-CGUGGCgCGg-CAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 31622 | 0.66 | 0.390945 |
Target: 5'- -gACGgccGCGCgGCGCaGCGCCGUCu- -3' miRNA: 3'- uaUGCac-CGCG-CGUGgCGCGGCAGcu -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 32379 | 0.69 | 0.24787 |
Target: 5'- -gAUG-GGCGCuaaCGCCGCGCUgGUCGAa -3' miRNA: 3'- uaUGCaCCGCGc--GUGGCGCGG-CAGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 32550 | 0.66 | 0.3822 |
Target: 5'- -gGCGUucaGcGCGCGCGuCUGCGCCGagaUUGAu -3' miRNA: 3'- uaUGCA---C-CGCGCGU-GGCGCGGC---AGCU- -5' |
|||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 32756 | 0.66 | 0.3822 |
Target: 5'- uUGCGcGGCGCaauGCgACCGaCGCaaaGUCGAu -3' miRNA: 3'- uAUGCaCCGCG---CG-UGGC-GCGg--CAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home