Results 81 - 100 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 33160 | 0.66 | 0.390945 |
Target: 5'- -aGCGcGGCGCcuuGCAUCGCGacggggaUGUCGAg -3' miRNA: 3'- uaUGCaCCGCG---CGUGGCGCg------GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 33573 | 0.69 | 0.256749 |
Target: 5'- -cGCGUcuacaucgaaaaagcGGCGaacgGCGCCGCGCUGaUCGAu -3' miRNA: 3'- uaUGCA---------------CCGCg---CGUGGCGCGGC-AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 33673 | 0.69 | 0.254186 |
Target: 5'- -----aGGCGCGCGCgCaCGCCGUCGc -3' miRNA: 3'- uaugcaCCGCGCGUG-GcGCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 34079 | 0.68 | 0.294878 |
Target: 5'- --cCGUGGC-CGaACCGuCGCCGUCGc -3' miRNA: 3'- uauGCACCGcGCgUGGC-GCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 34819 | 0.67 | 0.324722 |
Target: 5'- -aAC-UGGCuGCGCA-CGCGCCaGUCGGu -3' miRNA: 3'- uaUGcACCG-CGCGUgGCGCGG-CAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 35165 | 0.68 | 0.309526 |
Target: 5'- cUACGUGcGCGCGUACCaGCGCaaugCGc -3' miRNA: 3'- uAUGCAC-CGCGCGUGG-CGCGgca-GCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 35519 | 0.66 | 0.365104 |
Target: 5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3' miRNA: 3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 35548 | 0.69 | 0.235628 |
Target: 5'- -cGCG-GGCGgGCGCUacgGCGCCGcCGGc -3' miRNA: 3'- uaUGCaCCGCgCGUGG---CGCGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 35992 | 0.67 | 0.348543 |
Target: 5'- -cGCGUaauGGCGCGCgcGCCGCugcgcaugccagGCCG-CGAc -3' miRNA: 3'- uaUGCA---CCGCGCG--UGGCG------------CGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 36149 | 0.72 | 0.146943 |
Target: 5'- aGUACG-GGCGCGCGCUcgagGCGaaCGUCGAu -3' miRNA: 3'- -UAUGCaCCGCGCGUGG----CGCg-GCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 36216 | 0.73 | 0.128341 |
Target: 5'- -cGCGcaGGCGCccgGCGCCGCGUCGUCa- -3' miRNA: 3'- uaUGCa-CCGCG---CGUGGCGCGGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 37440 | 0.71 | 0.177114 |
Target: 5'- cAUACGUcGGCGCGCGCggucugCGCGgCGUCc- -3' miRNA: 3'- -UAUGCA-CCGCGCGUG------GCGCgGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 37814 | 0.68 | 0.302133 |
Target: 5'- -gACG-GGCGCGCAuCCGgCGCUcauGUCGc -3' miRNA: 3'- uaUGCaCCGCGCGU-GGC-GCGG---CAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 38350 | 0.69 | 0.254186 |
Target: 5'- gAUGCGaagucGGUGCGCACCGCGa--UCGAc -3' miRNA: 3'- -UAUGCa----CCGCGCGUGGCGCggcAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 38381 | 0.73 | 0.128341 |
Target: 5'- cUGCuGUGGCgaacgagcgcaaGCGCGCCGCaGCgGUCGAg -3' miRNA: 3'- uAUG-CACCG------------CGCGUGGCG-CGgCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 38629 | 0.68 | 0.309526 |
Target: 5'- -aGCGccGGCGCGaaugaaGCCGCGUCGcgcaUCGAc -3' miRNA: 3'- uaUGCa-CCGCGCg-----UGGCGCGGC----AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 38685 | 0.67 | 0.332526 |
Target: 5'- gGUGCGcGGCuaacaGCGCCGCaGCCG-CGAu -3' miRNA: 3'- -UAUGCaCCGcg---CGUGGCG-CGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 39138 | 0.71 | 0.191656 |
Target: 5'- -aACGUcGGCG-GCACCGUGUCGgCGAc -3' miRNA: 3'- uaUGCA-CCGCgCGUGGCGCGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 39717 | 0.68 | 0.273927 |
Target: 5'- -aAUGgccGGCGCGgGCCGCGUCGaccuggCGAg -3' miRNA: 3'- uaUGCa--CCGCGCgUGGCGCGGCa-----GCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 40874 | 0.67 | 0.317055 |
Target: 5'- -aACGUcgaagaGGCGCGCGCCuucugguCGCCGgCGAu -3' miRNA: 3'- uaUGCA------CCGCGCGUGGc------GCGGCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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