miRNA display CGI


Results 101 - 112 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 40879 0.67 0.348543
Target:  5'- -cGCGUGcacCGCAUgGCGCCGUCGc -3'
miRNA:   3'- uaUGCACcgcGCGUGgCGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 41162 0.69 0.260633
Target:  5'- -cGCGcGGCGUGgGCgGcCGUCGUCGAu -3'
miRNA:   3'- uaUGCaCCGCGCgUGgC-GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 42654 0.68 0.294878
Target:  5'- -gACGUGGCaaccgauCGCuACUGCGCCGaCGGa -3'
miRNA:   3'- uaUGCACCGc------GCG-UGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 42944 0.66 0.39982
Target:  5'- -----aGGCGCaaACCGCGCUGcUCGAc -3'
miRNA:   3'- uaugcaCCGCGcgUGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 44663 0.69 0.235628
Target:  5'- gAUGCGUcGCGCGCGCCGaagaaGUCGgCGGc -3'
miRNA:   3'- -UAUGCAcCGCGCGUGGCg----CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 44996 0.71 0.172489
Target:  5'- --uCGaGGCGCGCAUgGCGCCGUgGc -3'
miRNA:   3'- uauGCaCCGCGCGUGgCGCGGCAgCu -5'
24292 3' -60.8 NC_005263.2 + 45467 0.7 0.2297
Target:  5'- gAUACGccGGCaaGCGCgaugaACCGCGCgGUCGGc -3'
miRNA:   3'- -UAUGCa-CCG--CGCG-----UGGCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 45656 0.69 0.235628
Target:  5'- --uCGUucGGCGCGCaaguguuuGCCGCGCCGUa-- -3'
miRNA:   3'- uauGCA--CCGCGCG--------UGGCGCGGCAgcu -5'
24292 3' -60.8 NC_005263.2 + 46817 0.67 0.356756
Target:  5'- -aACGUGaGCGCGaucuuUCGCGCCGcucCGAc -3'
miRNA:   3'- uaUGCAC-CGCGCgu---GGCGCGGCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 47281 0.66 0.390945
Target:  5'- ---aGUGacGUGCGCGCCGaagcgcagucCGCUGUCGAc -3'
miRNA:   3'- uaugCAC--CGCGCGUGGC----------GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 47473 0.67 0.356756
Target:  5'- -cACG-GGCGUcacuggcaGCACCGgccCGCUGUCGGg -3'
miRNA:   3'- uaUGCaCCGCG--------CGUGGC---GCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 48059 0.69 0.266549
Target:  5'- gGUACGaaGGCGCGCccgaccuGCCGCGCCagUGAc -3'
miRNA:   3'- -UAUGCa-CCGCGCG-------UGGCGCGGcaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.