miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 37440 0.71 0.177114
Target:  5'- cAUACGUcGGCGCGCGCggucugCGCGgCGUCc- -3'
miRNA:   3'- -UAUGCA-CCGCGCGUG------GCGCgGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 36216 0.73 0.128341
Target:  5'- -cGCGcaGGCGCccgGCGCCGCGUCGUCa- -3'
miRNA:   3'- uaUGCa-CCGCG---CGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 36149 0.72 0.146943
Target:  5'- aGUACG-GGCGCGCGCUcgagGCGaaCGUCGAu -3'
miRNA:   3'- -UAUGCaCCGCGCGUGG----CGCg-GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 35992 0.67 0.348543
Target:  5'- -cGCGUaauGGCGCGCgcGCCGCugcgcaugccagGCCG-CGAc -3'
miRNA:   3'- uaUGCA---CCGCGCG--UGGCG------------CGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 35548 0.69 0.235628
Target:  5'- -cGCG-GGCGgGCGCUacgGCGCCGcCGGc -3'
miRNA:   3'- uaUGCaCCGCgCGUGG---CGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 35519 0.66 0.365104
Target:  5'- -cAC-UGGCGCGCcgACUGCGCCcggCGGc -3'
miRNA:   3'- uaUGcACCGCGCG--UGGCGCGGca-GCU- -5'
24292 3' -60.8 NC_005263.2 + 35165 0.68 0.309526
Target:  5'- cUACGUGcGCGCGUACCaGCGCaaugCGc -3'
miRNA:   3'- uAUGCAC-CGCGCGUGG-CGCGgca-GCu -5'
24292 3' -60.8 NC_005263.2 + 34819 0.67 0.324722
Target:  5'- -aAC-UGGCuGCGCA-CGCGCCaGUCGGu -3'
miRNA:   3'- uaUGcACCG-CGCGUgGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 34079 0.68 0.294878
Target:  5'- --cCGUGGC-CGaACCGuCGCCGUCGc -3'
miRNA:   3'- uauGCACCGcGCgUGGC-GCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 33673 0.69 0.254186
Target:  5'- -----aGGCGCGCGCgCaCGCCGUCGc -3'
miRNA:   3'- uaugcaCCGCGCGUG-GcGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 33573 0.69 0.256749
Target:  5'- -cGCGUcuacaucgaaaaagcGGCGaacgGCGCCGCGCUGaUCGAu -3'
miRNA:   3'- uaUGCA---------------CCGCg---CGUGGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 33160 0.66 0.390945
Target:  5'- -aGCGcGGCGCcuuGCAUCGCGacggggaUGUCGAg -3'
miRNA:   3'- uaUGCaCCGCG---CGUGGCGCg------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 32756 0.66 0.3822
Target:  5'- uUGCGcGGCGCaauGCgACCGaCGCaaaGUCGAu -3'
miRNA:   3'- uAUGCaCCGCG---CG-UGGC-GCGg--CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 32550 0.66 0.3822
Target:  5'- -gGCGUucaGcGCGCGCGuCUGCGCCGagaUUGAu -3'
miRNA:   3'- uaUGCA---C-CGCGCGU-GGCGCGGC---AGCU- -5'
24292 3' -60.8 NC_005263.2 + 32379 0.69 0.24787
Target:  5'- -gAUG-GGCGCuaaCGCCGCGCUgGUCGAa -3'
miRNA:   3'- uaUGCaCCGCGc--GUGGCGCGG-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 31622 0.66 0.390945
Target:  5'- -gACGgccGCGCgGCGCaGCGCCGUCu- -3'
miRNA:   3'- uaUGCac-CGCG-CGUGgCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 31255 0.73 0.139224
Target:  5'- -cGCGcGGCGCgGCGCCGgGCagGUCGAa -3'
miRNA:   3'- uaUGCaCCGCG-CGUGGCgCGg-CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 30714 0.73 0.139224
Target:  5'- -cGCcaGGCGCGCgGCCGCGCCGgcaGAc -3'
miRNA:   3'- uaUGcaCCGCGCG-UGGCGCGGCag-CU- -5'
24292 3' -60.8 NC_005263.2 + 29769 0.67 0.332526
Target:  5'- cUGCG-GGUucaGCAgCGUGCCGUCGGc -3'
miRNA:   3'- uAUGCaCCGcg-CGUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 29763 0.68 0.302133
Target:  5'- gGUGCGgaagcGGCucacuuguuGCGCACCGUuaCGUCGGc -3'
miRNA:   3'- -UAUGCa----CCG---------CGCGUGGCGcgGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.