miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 29172 0.67 0.348543
Target:  5'- -----cGGCGCGCucgagcgcucguGCCGCGCgGUCa- -3'
miRNA:   3'- uaugcaCCGCGCG------------UGGCGCGgCAGcu -5'
24292 3' -60.8 NC_005263.2 + 29065 0.74 0.118249
Target:  5'- -cGCGUccucggggcGGCGCGCAUCG-GCCGUCGc -3'
miRNA:   3'- uaUGCA---------CCGCGCGUGGCgCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 29018 0.66 0.373585
Target:  5'- aGUGCGU--UGCGCACCGCgacGCCGUacUGAc -3'
miRNA:   3'- -UAUGCAccGCGCGUGGCG---CGGCA--GCU- -5'
24292 3' -60.8 NC_005263.2 + 28219 0.66 0.365104
Target:  5'- uGUugGUGGCcugcaucggccGCGCucGCCGCGCuCGcCGu -3'
miRNA:   3'- -UAugCACCG-----------CGCG--UGGCGCG-GCaGCu -5'
24292 3' -60.8 NC_005263.2 + 28107 0.67 0.356756
Target:  5'- -gACGUGuCGaucgcaaGUGCCGCGCCGgggCGAa -3'
miRNA:   3'- uaUGCACcGCg------CGUGGCGCGGCa--GCU- -5'
24292 3' -60.8 NC_005263.2 + 28093 0.66 0.39982
Target:  5'- cGUGUGuUGGCGCgGCcgAUCGCGUCGUUGAc -3'
miRNA:   3'- -UAUGC-ACCGCG-CG--UGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 27918 0.66 0.373585
Target:  5'- -gACGgcGGCGCGuCGCCcgGCGCgcucuCGUCGAu -3'
miRNA:   3'- uaUGCa-CCGCGC-GUGG--CGCG-----GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 27233 0.66 0.408823
Target:  5'- --uCGUGaGCGUG-AUCGCGCCGcCGGc -3'
miRNA:   3'- uauGCAC-CGCGCgUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 27225 0.66 0.408823
Target:  5'- cGUGCGccuccugccacUGGCGCaGCGCCGuUGCgacgcucgCGUCGAa -3'
miRNA:   3'- -UAUGC-----------ACCGCG-CGUGGC-GCG--------GCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 27129 0.74 0.108901
Target:  5'- -cGCGcaGGCGCGCAgCCGCGUCGgCGAu -3'
miRNA:   3'- uaUGCa-CCGCGCGU-GGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 26860 1.06 0.000401
Target:  5'- aAUACGUGGCGCGCACCGCGCCGUCGAu -3'
miRNA:   3'- -UAUGCACCGCGCGUGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 25944 0.77 0.07153
Target:  5'- -gGCGcUGGCGCaaugcgaGCGUCGCGCCGUCGAg -3'
miRNA:   3'- uaUGC-ACCGCG-------CGUGGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 25569 0.71 0.196732
Target:  5'- -gACGUcGGCGUccGCGCCGC-CCGUCa- -3'
miRNA:   3'- uaUGCA-CCGCG--CGUGGCGcGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 24697 0.66 0.408823
Target:  5'- -aACGgcGGCGCGCcgaaCGUGCCGggCGGc -3'
miRNA:   3'- uaUGCa-CCGCGCGug--GCGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 24202 0.67 0.317055
Target:  5'- -aGCGaUGcGCGCGaccugguuCAgCGCGCCGUUGAa -3'
miRNA:   3'- uaUGC-AC-CGCGC--------GUgGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 24142 0.66 0.39982
Target:  5'- uUGCGUcgcGGuUGCGaa-CGCGCUGUCGAa -3'
miRNA:   3'- uAUGCA---CC-GCGCgugGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 23905 0.68 0.301402
Target:  5'- --uCGUGaGCGCGC-CCGCGagcgugaCCGUCGc -3'
miRNA:   3'- uauGCAC-CGCGCGuGGCGC-------GGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 23554 0.72 0.14576
Target:  5'- --cCGUGGCGCagccgccgccgcccGCGCCGcCGCCGUUGc -3'
miRNA:   3'- uauGCACCGCG--------------CGUGGC-GCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 21187 0.68 0.302133
Target:  5'- -gACGcGGaCGCGCGCgGCGCgGgCGAg -3'
miRNA:   3'- uaUGCaCC-GCGCGUGgCGCGgCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 21183 0.71 0.175715
Target:  5'- cGUGCGUGGCGagcuguucCGCAuCCGCGUugcacaaauccuguCGUCGAc -3'
miRNA:   3'- -UAUGCACCGC--------GCGU-GGCGCG--------------GCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.