miRNA display CGI


Results 81 - 100 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24292 3' -60.8 NC_005263.2 + 13655 0.74 0.115053
Target:  5'- -gACGgucGUGCGCACCGCGUCG-CGAa -3'
miRNA:   3'- uaUGCac-CGCGCGUGGCGCGGCaGCU- -5'
24292 3' -60.8 NC_005263.2 + 12342 0.66 0.390945
Target:  5'- -gGCGUGGCcgguuuccucaaGCGUcucgcGCCGCGCCG-Cu- -3'
miRNA:   3'- uaUGCACCG------------CGCG-----UGGCGCGGCaGcu -5'
24292 3' -60.8 NC_005263.2 + 12109 0.67 0.316296
Target:  5'- cAUGCGcagcGGCGCGCGCgccauuacgCGCGCUccaggcgGUCGAg -3'
miRNA:   3'- -UAUGCa---CCGCGCGUG---------GCGCGG-------CAGCU- -5'
24292 3' -60.8 NC_005263.2 + 11611 0.68 0.287758
Target:  5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3'
miRNA:   3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5'
24292 3' -60.8 NC_005263.2 + 11473 0.68 0.294878
Target:  5'- -cGCGcUGcCGCGCACUguuaaacuGCGCCGUCGc -3'
miRNA:   3'- uaUGC-ACcGCGCGUGG--------CGCGGCAGCu -5'
24292 3' -60.8 NC_005263.2 + 10016 0.76 0.08252
Target:  5'- gGUGCG-GGCGCaGCACCGCcGCCGagcugcUCGAg -3'
miRNA:   3'- -UAUGCaCCGCG-CGUGGCG-CGGC------AGCU- -5'
24292 3' -60.8 NC_005263.2 + 9974 0.67 0.339666
Target:  5'- cUGCG-GGUGCGCacGCCGUccgguucGCCGUCu- -3'
miRNA:   3'- uAUGCaCCGCGCG--UGGCG-------CGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 9623 0.67 0.340466
Target:  5'- cUGCGUGaGCGCcucGCGguaaaucuggcUUGCGCUGUCGAg -3'
miRNA:   3'- uAUGCAC-CGCG---CGU-----------GGCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 9573 0.67 0.317055
Target:  5'- -aACGUGuccagGCGCugCGUGCCGUCc- -3'
miRNA:   3'- uaUGCACcg---CGCGugGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 8737 0.69 0.267213
Target:  5'- gGUGCGUcGUagaaGCGCGCCGCcGCCGagCGAa -3'
miRNA:   3'- -UAUGCAcCG----CGCGUGGCG-CGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 8189 0.68 0.302133
Target:  5'- cUGCGUuuucgguugcGGCaCGUACgGCGCCGUCa- -3'
miRNA:   3'- uAUGCA----------CCGcGCGUGgCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 8034 0.69 0.267213
Target:  5'- uUGCGaGGCGUccGCGCCgugGCGCCGcgCGAg -3'
miRNA:   3'- uAUGCaCCGCG--CGUGG---CGCGGCa-GCU- -5'
24292 3' -60.8 NC_005263.2 + 6611 0.73 0.128341
Target:  5'- -cGCGUucggcGGCGCGCuCgGCGCgGUCGAg -3'
miRNA:   3'- uaUGCA-----CCGCGCGuGgCGCGgCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 6328 0.66 0.408823
Target:  5'- -----cGGCGCGCGagucgcCCGCGCCGaUCu- -3'
miRNA:   3'- uaugcaCCGCGCGU------GGCGCGGC-AGcu -5'
24292 3' -60.8 NC_005263.2 + 6247 0.69 0.235628
Target:  5'- -cGCGgccaGGCGCGguC-GUGCCGUCGGg -3'
miRNA:   3'- uaUGCa---CCGCGCguGgCGCGGCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 6055 0.67 0.348543
Target:  5'- cGUugGcGGCGCGCuucACgCGCGCCGa--- -3'
miRNA:   3'- -UAugCaCCGCGCG---UG-GCGCGGCagcu -5'
24292 3' -60.8 NC_005263.2 + 5788 0.67 0.348543
Target:  5'- -cGCGcacGCGC-CGCUGCGCCGUCu- -3'
miRNA:   3'- uaUGCac-CGCGcGUGGCGCGGCAGcu -5'
24292 3' -60.8 NC_005263.2 + 5472 0.66 0.390945
Target:  5'- -cACGUcGGCGCuGCuuCGUGCUGcUCGAc -3'
miRNA:   3'- uaUGCA-CCGCG-CGugGCGCGGC-AGCU- -5'
24292 3' -60.8 NC_005263.2 + 5143 0.66 0.373585
Target:  5'- -cACG-GGCGaacCGC-CCGUGuuGUCGAg -3'
miRNA:   3'- uaUGCaCCGC---GCGuGGCGCggCAGCU- -5'
24292 3' -60.8 NC_005263.2 + 4892 0.72 0.16356
Target:  5'- -cAUGUaGCGCGCGCugcgauagCGCGCCGUCGc -3'
miRNA:   3'- uaUGCAcCGCGCGUG--------GCGCGGCAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.