Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24292 | 3' | -60.8 | NC_005263.2 | + | 26860 | 1.06 | 0.000401 |
Target: 5'- aAUACGUGGCGCGCACCGCGCCGUCGAu -3' miRNA: 3'- -UAUGCACCGCGCGUGGCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 44663 | 0.69 | 0.235628 |
Target: 5'- gAUGCGUcGCGCGCGCCGaagaaGUCGgCGGc -3' miRNA: 3'- -UAUGCAcCGCGCGUGGCg----CGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4851 | 0.68 | 0.287758 |
Target: 5'- --cCGUacGCGCGCGCCGUGCCGa--- -3' miRNA: 3'- uauGCAc-CGCGCGUGGCGCGGCagcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 1283 | 0.66 | 0.408823 |
Target: 5'- -cGCcUGGCGCGCGuuGCGUuaCG-CGAu -3' miRNA: 3'- uaUGcACCGCGCGUggCGCG--GCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 29065 | 0.74 | 0.118249 |
Target: 5'- -cGCGUccucggggcGGCGCGCAUCG-GCCGUCGc -3' miRNA: 3'- uaUGCA---------CCGCGCGUGGCgCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 6611 | 0.73 | 0.128341 |
Target: 5'- -cGCGUucggcGGCGCGCuCgGCGCgGUCGAg -3' miRNA: 3'- uaUGCA-----CCGCGCGuGgCGCGgCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 30714 | 0.73 | 0.139224 |
Target: 5'- -cGCcaGGCGCGCgGCCGCGCCGgcaGAc -3' miRNA: 3'- uaUGcaCCGCGCG-UGGCGCGGCag-CU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 23554 | 0.72 | 0.14576 |
Target: 5'- --cCGUGGCGCagccgccgccgcccGCGCCGcCGCCGUUGc -3' miRNA: 3'- uauGCACCGCG--------------CGUGGC-GCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 37440 | 0.71 | 0.177114 |
Target: 5'- cAUACGUcGGCGCGCGCggucugCGCGgCGUCc- -3' miRNA: 3'- -UAUGCA-CCGCGCGUG------GCGCgGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4659 | 0.7 | 0.232056 |
Target: 5'- -gACGggcaggccGGCGCGCgggucuuucgucaggAUCGUGCCGUCGGc -3' miRNA: 3'- uaUGCa-------CCGCGCG---------------UGGCGCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 20980 | 0.71 | 0.191656 |
Target: 5'- -gACGcGGCuGCGCGCCuGCGC-GUCGAc -3' miRNA: 3'- uaUGCaCCG-CGCGUGG-CGCGgCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 44996 | 0.71 | 0.172489 |
Target: 5'- --uCGaGGCGCGCAUgGCGCCGUgGc -3' miRNA: 3'- uauGCaCCGCGCGUGgCGCGGCAgCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 10016 | 0.76 | 0.08252 |
Target: 5'- gGUGCG-GGCGCaGCACCGCcGCCGagcugcUCGAg -3' miRNA: 3'- -UAUGCaCCGCG-CGUGGCG-CGGC------AGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 25569 | 0.71 | 0.196732 |
Target: 5'- -gACGUcGGCGUccGCGCCGC-CCGUCa- -3' miRNA: 3'- uaUGCA-CCGCG--CGUGGCGcGGCAGcu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 20649 | 0.75 | 0.092248 |
Target: 5'- -cGCaGUGGC-CGCGCCGCucgucgcgGCCGUCGAa -3' miRNA: 3'- uaUG-CACCGcGCGUGGCG--------CGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 4892 | 0.72 | 0.16356 |
Target: 5'- -cAUGUaGCGCGCGCugcgauagCGCGCCGUCGc -3' miRNA: 3'- uaUGCAcCGCGCGUG--------GCGCGGCAGCu -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 20190 | 0.7 | 0.212667 |
Target: 5'- -cGCGccgGGCGaCGCGCC--GCCGUCGAg -3' miRNA: 3'- uaUGCa--CCGC-GCGUGGcgCGGCAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 11611 | 0.68 | 0.287758 |
Target: 5'- ---aGUGGCGCaGCACUuCGCCuUCGAc -3' miRNA: 3'- uaugCACCGCG-CGUGGcGCGGcAGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 13655 | 0.74 | 0.115053 |
Target: 5'- -gACGgucGUGCGCACCGCGUCG-CGAa -3' miRNA: 3'- uaUGCac-CGCGCGUGGCGCGGCaGCU- -5' |
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24292 | 3' | -60.8 | NC_005263.2 | + | 14434 | 0.73 | 0.139224 |
Target: 5'- cAUGCGacGGCGUGCGCgCGCGCCucuuUCGAg -3' miRNA: 3'- -UAUGCa-CCGCGCGUG-GCGCGGc---AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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